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requirements.txt
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requirements.txt
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absl-py==2.0.0
appdirs==1.4.4
asciitree==0.3.3
attrs==23.1.0
blackjax==1.0.0
certifi==2023.11.17
charset-normalizer==3.3.2
chex==0.1.85
click==8.1.7
coloredlogs==15.0.1
ConfigArgParse==1.7
connection-pool==0.0.3
contourpy==1.2.0
cuda-python==12.3.0
cycler==0.12.1
cyvcf2==0.30.25
datrie==0.8.2
demes==0.2.3
docutils==0.20.1
dpath==2.1.6
-e git+ssh://[email protected]:/terhorst/eastbay.git@d7bcab6640873feb30b5ab91d61160cc2eddf7c3#egg=eastbay
fasteners==0.19
fastjsonschema==2.19.0
fastprogress==1.0.3
fonttools==4.47.0
gitdb==4.0.11
GitPython==3.1.40
humanfriendly==10.0
humanize==4.9.0
idna==3.6
intervaltree==3.1.0
jax==0.4.23
jax-dataclasses==1.6.0
jaxlib==0.4.23+cuda12.cudnn89
jaxopt==0.8.2
jaxtyping==0.2.25
Jinja2==3.1.2
joblib==1.3.2
jsonschema==4.20.0
jsonschema-specifications==2023.11.2
jupyter_core==5.5.1
kiwisolver==1.4.5
MarkupSafe==2.1.3
matplotlib==3.8.2
ml-dtypes==0.3.1
msprime==1.3.0
nbformat==5.9.2
newick==1.9.0
numcodecs==0.12.1
numpy==1.26.2
nvidia-cublas-cu12==12.3.4.1
nvidia-cuda-cupti-cu12==12.3.101
nvidia-cuda-nvcc-cu12==12.3.103
nvidia-cuda-nvrtc-cu12==12.3.103
nvidia-cuda-runtime-cu12==12.3.101
nvidia-cudnn-cu12==8.9.7.29
nvidia-cufft-cu12==11.0.12.1
nvidia-cusolver-cu12==11.5.4.101
nvidia-cusparse-cu12==12.2.0.103
nvidia-nccl-cu12==2.19.3
nvidia-nvjitlink-cu12==12.3.101
opt-einsum==3.3.0
optax==0.1.7
packaging==23.2
pandas==2.1.4
Pillow==10.1.0
plac==1.4.2
platformdirs==4.1.0
psutil==5.9.7
PuLP==2.7.0
pyparsing==3.1.1
pysam==0.22.0
pyslim==1.0.4
python-dateutil==2.8.2
pytz==2023.3.post1
PyYAML==6.0.1
referencing==0.32.0
requests==2.31.0
reretry==0.11.8
rpds-py==0.15.2
ruamel.yaml==0.18.5
ruamel.yaml.clib==0.2.8
scikit-learn==1.3.2
scipy==1.11.4
sh==2.0.6
six==1.16.0
smart-open==6.4.0
smcpp @ git+ssh://[email protected]:/popgenmethods/smcpp@6779faec78f1db2d84b3cd8176cd99731c71d584
smmap==5.0.1
snakemake==7.32.4
sortedcontainers==2.4.0
stdpopsim==0.2.0
stopit==1.1.2
svgwrite==1.4.3
tabulate==0.9.0
threadpoolctl==3.2.0
throttler==1.2.2
toolz==0.12.0
toposort==1.10
tqdm==4.66.1
traitlets==5.14.0
tskit==0.5.6
typeguard==2.13.3
typing_extensions==4.9.0
tzdata==2023.3
urllib3==2.1.0
wrapt==1.16.0
yte==1.5.4
zarr==2.16.1