Is the data incomplete or not in the format expected by the program

[zxl555666]

When I run compile, there is no display of the run option, only "set new directories" and "load last run settings" are shown, and in conda, there is such code: Failed to find a key piece of info: planes found: False fovs found: True times found: True Limited traceback: File "c:\users\xxxxx\napari-mm3\src\napari_mm3_deriving_widgets.py", line 358, in _load_from_data_conditional traceback.print_stack(limit=1). What could be the reason for this, and how should I handle it? Thank you!

[zxl555666]

[rthiermann]

Hi, can you share some more info about how your input data is formatted and named? (e.g. tiff files xy{fov number}_t{time step}.tif, etc. or something else?)

[zxl555666]

Demonstration20241116.zip
@RyanThiermann

Hello!

I have uploaded the video of the operation process to GitHub. You can view it through the following link:

https://github.com/zxl555666/Video-site

I hope this will help you better understand the issues I'm encountering. Thank you very much for your assistance and support!

Best regards,

Lei Zhuang

ShanghaiTech University

[rthiermann]

Thank you, that's helpful -- can you also share a sample of your data? for instance, a few of the tiffs output in the first step.

[zxl555666]

TIFF-1.zip
TIFF-2.zip
TIFF-3.zip

@RyanThiermann

Thank you for your patience and guidance. Due to the attachment size limitations on the forum, I have split the TIFF output data into three zip packages. You can find and download them from the attachments below:

1. [TIFF-1.zip]
2. [TIFF-2.zip]
3. [TIFF-3.zip]

Please unzip and review the contents of these packages. I hope these files will provide the necessary insights into the issue at hand. If you need any further information or additional data, please let me know.

Thank you again for your assistance.

Best regards,

Lei Zhuang
ShanghaiTech University

[rthiermann]

Thanks for catching this. It looks like there was a change in a recent version of tifffile that changed how input images are stored and caused the error. I've pushed an update that should fix it. Can you pull the most recent version of the code (git pull origin main) and try again?

Let me know if it works or if you run into any other problems.