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web-bifo.rb
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web-bifo.rb
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#Template generated on 2019-02-18 16:53:32 +0000
#Do not edit this file. Modify the relevant config and regenerate
require 'digest'
class WebBifo < Formula
url 'file://'+File.expand_path(__FILE__)
desc 'Dependencies for the WebBifo formula'
sha256 Digest::SHA256.file(File.expand_path(__FILE__)).hexdigest
version '4'
depends_on 'kamaldodiya/external/genewise'
depends_on 'kamaldodiya/external/emboss'
depends_on 'samtools'
depends_on 'ensembl/ensembl/r2r'
depends_on 'kamaldodiya/ensembl/hal'
depends_on 'ensembl/ensembl/bioperl-169'
depends_on 'kamaldodiya/external/blast'
depends_on 'kamaldodiya/external/repeatmasker' => ["with-dfam", "without-phrap", "without-repbase"]
depends_on 'ensembl/ensembl/crossmap'
depends_on 'brewsci/bio/vcflib'
depends_on 'vcftools'
depends_on 'bcftools'
depends_on 'bedtools'
depends_on 'gsl'
depends_on 'kamaldodiya/external/wiggletools'
depends_on 'kamaldodiya/external/libbigwig'
def install
File.open('web-bifo', 'w') { |file|
file.write '#!/bin/sh'+"\n"
deps.each do | dep |
f = dep.to_formula
file.write "echo "+[f.full_name, f.version, f.prefix].join("\t")+"\n"
end
}
bin.install 'web-bifo'
end
end