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"[Error] Cannot open input file : %s" % read_file #29

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sunta3iouxos opened this issue Sep 24, 2019 · 1 comment
Open

"[Error] Cannot open input file : %s" % read_file #29

sunta3iouxos opened this issue Sep 24, 2019 · 1 comment

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@sunta3iouxos
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command used
./bs3-align -1 test_data/pair1.fq -2 test_data/pair2.fq -o WGBC -f sam -g reference_genome/genome.fa -d reference_genome/

error I got:

File "bs3-align.py", line 149
print "[Error] Cannot open input file : %s" % read_file
^
SyntaxError: Missing parentheses in call to 'print'. Did you mean print("[Error] Cannot open input file : %s" % read_file)?

@AssumeAssume
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That is because you are using python with version 3.X, you need to change your python to 2.X to run the command.

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