Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Necessary depth for detecting a species given minimum relative abundance #3

Open
bhillmann opened this issue Nov 18, 2016 · 2 comments
Open

Necessary depth for detecting a species given minimum relative abundance #3

bhillmann opened this issue Nov 18, 2016 · 2 comments
Assignees
@bhillmann
Labels
help wanted sprint

Comments

@bhillmann
Copy link
Collaborator

bhillmann commented Nov 18, 2016 •
edited
Loading

Plot:

Y-axis Depth by Relative Abundance
X-axis K-mer Count Uniqueness
@bhillmann bhillmann self-assigned this Nov 18, 2016
@bhillmann
Copy link
Collaborator Author

I am doing this in 'min_depth'.

@bhillmann
Copy link
Collaborator Author

bhillmann commented Dec 5, 2016 •
edited
Loading

This is highly dependent on the database and how many unique k-mers a species has in the database. Stuck on how to get started here and I am confused by what we meant by this y-axis @danknights

@bhillmann bhillmann changed the title Necessary depth for detecting a given minimum relative abundance Necessary depth for detecting a species given minimum relative abundance Dec 6, 2016
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@bhillmann bhillmann

Labels
help wanted sprint
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@danknights @bhillmann