Ultra deep sequencing validation

[bhillmann]

• Use an ultra-deep sequencing run to get rarefaction curve of imputed vs. observed genes
• Download the data

[bhillmann]

Ultra-deep sequencing should be downloaded

[bhillmann]

The path for this task is located below:

ultra_deep/

[bhillmann]

for i in `cat extract_files.txt`; do 7z -y x -so $i | 7z -y x -si -ttar -o./R1_QC; done 
shi7en -SE --combine_fasta False --convert_fasta False -trim_l 50 -i ./ -o ./R1_QC