TARGET Data is Ready for Release

[averyniceday]

Done Condition (What do we need? Why do we need it? Keep this is small as possible!)

• Collect Feedback from Niki/Curation
• Documentation Finalized
• Adjustments from feedback made

If a large amount of changes are needed, meet and replan cards.

Feedback from Anusha 10/1:

• Somatic Status Info is missing. (If I remember right all target studies have matched normals) data is not available, but Anusha will double-check this with Ritika
• Can we link readme.md to study description?
• Change Morphology Code --> Morphology to match with other sudies
• Normalize attributes as some of them are not in Camel case Changed TUMOR_CLASSIFICATION to camel case
• Disease Status is only 0.3%. Is that expected? It's only available for 15 patients in ALAL, which is correct-- for other studies it has been removed
• There are a couple of samples where there is no mutation info. Eg:TARGET_10_PALKMM. Can we confirm that? This is correct, I added a note to the README saying that some patients may be missing mutation info
• Can we check if there is segment data? Not in the format we want
• bll_target_gdc has Biopsy site for only one sample Removed the attribute for BLL

Technical Description (How are we going to achieve the above)

Potential Issues

Dependencies

Technical Requirements

Outside People/Teams

Changes