diff --git a/src/modules/sync/sync.ts b/src/modules/sync/sync.ts
index 7e585560..a495ee85 100644
--- a/src/modules/sync/sync.ts
+++ b/src/modules/sync/sync.ts
@@ -3,7 +3,7 @@ import { ManagementClient } from "@kontent-ai/management-sdk";
 import { logInfo, LogOptions } from "../../log.js";
 import { serially } from "../../utils/requests.js";
 import { syncAssetFolders } from "./sync/assetFolders.js";
-import { syncCollections } from "./sync/collections.js";
+import { syncAddAndReplaceCollections, syncRemoveCollections } from "./sync/collections.js";
 import {
   addElementsIntoSnippetsWithoutReferences,
   addSnippetsReferences,
@@ -22,7 +22,9 @@ export const sync = async (client: ManagementClient, diff: DiffModel, logOptions
   await syncAssetFolders(client, diff.assetFolders, logOptions);
 
   logInfo(logOptions, "standard", "Syncing Collections");
-  await syncCollections(client, diff.collections);
+  await syncAddAndReplaceCollections(client, diff.collections);
+
+  await syncRemoveCollections(client, diff.collections);
 
   await syncTaxonomies(client, diff.taxonomyGroups, logOptions);
 
diff --git a/src/modules/sync/sync/collections.ts b/src/modules/sync/sync/collections.ts
index 0cd2c389..975f919e 100644
--- a/src/modules/sync/sync/collections.ts
+++ b/src/modules/sync/sync/collections.ts
@@ -4,14 +4,25 @@ import { omit } from "../../../utils/object.js";
 import { DiffModel } from "../types/diffModel.js";
 import { getTargetCodename, PatchOperation } from "../types/patchOperation.js";
 
-export const syncCollections = (client: ManagementClient, collections: DiffModel["collections"]) => {
+export const syncAddAndReplaceCollections = (client: ManagementClient, collections: DiffModel["collections"]) => {
   if (!collections.length) {
     return Promise.resolve();
   }
 
   return client
     .setCollections()
-    .withData(collections.map(transformCollectionsReferences))
+    .withData(collections.filter(op => op.op !== "remove").map(transformCollectionsReferences))
+    .toPromise();
+};
+
+export const syncRemoveCollections = (client: ManagementClient, collections: DiffModel["collections"]) => {
+  if (!collections.length) {
+    return Promise.resolve();
+  }
+
+  return client
+    .setCollections()
+    .withData(collections.filter(op => op.op === "remove").map(transformCollectionsReferences))
     .toPromise();
 };