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Napari automatically downsamples image when using sm.pl.gate_finder() #79

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MargotCh opened this issue Oct 18, 2023 · 3 comments
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@MargotCh
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Dear all,

I am wondering if there is a way load my image with sm.pl.gate_finder() without napari automatically downscaling it when the image is bigger than the maximum texture size of my graphic card allows?

When using napari manually I can use the multiscale functionality like this:

img = io.imread('your_tif.tif')
viewer = napari.Viewer()
viewer.add_image([img, img[::2,::2]])

as described by @melonora here: Napari does not display full resolution

Is it possible to use a similar approach within the scimap function?

Thanks for your help!
Margot

@melonora
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Within napari we are looking to fix this. But the solution in the post could be quickly implemented for now. Let me know if you would like some more information

@ajitjohnson
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I apologize for missing this issue. For some reason, I have not been receiving notifications for the issues raised in this channel. Does the issue still persist, and would you need help? Thank you.

@melonora
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I think the issue would still be persisting as the issue is not fixed in the current versions of napari yet. I will pick it up for version 0.5.0, but we are in the release stage of 0.4.19 currently.

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