Certificate verification failed

[msfuentealba]

Hi all,

I'm trying to run the monorail-external with SRA input but I'm getting the following error. Any ideas? Thanks

2022-12-15T18:42:12 prefetch.2.9.1 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -9984 ( X509 - Certificate verification failed, e.g. CRL, CA or signature check failed ) 2022-12-15T18:42:12 prefetch.2.9.1 sys: mbedtls_ssl_get_verify_result returned 0x4008 ( !! The certificate is not correctly signed by the trusted CA !! The certificate is signed with an unacceptable hash. ) 2022-12-15T18:42:12 prefetch.2.9.1 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing '130.14.29.110' from 'x.x.x.x' 2022-12-15T18:42:12 prefetch.2.9.1 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'www.ncbi.nlm.nih.gov' (130.14.29.110) from 'x.x.x.x'

[ChristopherWilks]

Hi @msfuentealba,

That sounds like an older Pump Docker image version which had an old version of SRA toolkit (which has the problem you posted). If you haven't already, I'd suggest trying the latest Pump Docker image: 1.1.1 (as of 2022-10-12) https://quay.io/broadsword/recount-pump?tab=tags