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.gitlab-ci.yml
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.gitlab-ci.yml
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workflow:
rules:
- if: $CI_COMMIT_TAG
when: never
- when: always
stages:
- environment
- version
- test
- build
- deploy
before_script:
# TODO: recover environment path from modulefile instead of assuming the sstelmo path(s)
# https://re-git.lanl.gov/aea/python-projects/waves/-/issues/7
- aea_projects='/projects'
- aea_compute_path="${aea_projects}/aea_compute"
- aea_conda_channel="${aea_compute_path}/aea-conda"
- aea_modulefiles=${aea_compute_path}/modulefiles
- module use ${aea_modulefiles}
- module use ${PWD}/modulefiles
# Prefer the CI environment and fall back to AEA environment(s)
- project_environment='tardigrade_vector_tools-env'
- environment_choices="${project_environment} aea-beta aea-release"
- for env in ${environment_choices}; do if [[ -d "${aea_compute_path}/${env}" ]]; then environment=${env}; break; fi; done
- echo ${environment}
- module load ${environment}
- conda info
# Build the Conda environment if it's missing
# TODO: kick off 'environment' job for missing environments instead of re-creating the environment build logic here
# https://re-git.lanl.gov/kbrindley/waves/-/issues/8
- environment_path="${aea_compute_path}/${project_environment}"
- conda_channels="--channel ${aea_conda_channel} --channel conda-forge"
- conda_options="--yes ${conda_channels} --override-channels"
- |
if [[ ! -d ${environment_path} ]]; then
export ALL_PROXY="proxyout.lanl.gov:8080"
export HTTP_PROXY="http://$ALL_PROXY"
export HTTPS_PROXY=$HTTP_PROXY
conda create --prefix ${environment_path} --file environment.txt ${conda_options};
chmod -R 755 ${environment_path}
unset ALL_PROXY
unset HTTP_PROXY
unset HTTPS_PROXY
fi
- if [[ ${project_environment} != ${environment} ]]; then module unload ${environment}; module load ${project_environment}; fi
- conda_artifacts_directory='conda-bld'
# FIXME: (1) Without setting this to false, Git webserver API calls to re-git.lanl.gov will throw errors about
# self-signed certificates. Work on CI server and Gitlab webserver configurations so that this is no longer
# necessary. There is a matching "FIXME: (1)" tag where the process is reversed that must also be removed when this
# is fixed.
- git config --local http.sslVerify false
after_script:
# FIXME: (1) Reset the repository Git configuration to preserve ssl verifications. Remove when the server(s)
# configurations no longer require us to drop ssl verifications.
- git config --local http.sslVerify true
environment:
stage: environment
variables:
GIT_STRATEGY: clone
rules:
- if: $CI_PIPELINE_SOURCE == "schedule" || $CI_COMMIT_BRANCH == "main" || $CI_COMMIT_BRANCH == "dev"
changes:
- "modulefiles/*"
- "environment.txt"
script:
- export ALL_PROXY="proxyout.lanl.gov:8080"
- export HTTP_PROXY="http://$ALL_PROXY"
- export HTTPS_PROXY=$HTTP_PROXY
# Re-build the Conda environment on changes to environment files
- conda create --prefix ${environment_path} --file environment.txt ${conda_options}
# Remove write permissions from group to avoid accidental environment changes
- chmod -R 755 ${environment_path}
# place the common modulefiles in an accessible location
- cp ${PWD}/modulefiles/* ${aea_modulefiles}
tags:
- sstelmo-shell-aea
microbump:
stage: version
variables:
GIT_STRATEGY: clone
rules:
- if: $CI_PIPELINE_SOURCE == "schedule"
when: never
- if: $CI_COMMIT_BRANCH == "main"
script:
# Conditionally "bump" micro version number. setuptools_scm already bumps number, just need to strip local version.
- old_version=$(python -m setuptools_scm)
# First capture group is the major.minor.micro numbers
# Second capture group is everything following micro
- version_regex='\([0-9]\+\.[0-9]\+\.[0-9]\+\)\(.*\)'
# Returns clean production tag regardless if tagged already
- production_version=$(echo ${old_version} | sed "s/${version_regex}/\1/g")
# Catch unexpected production version regex and exit with error if suffix is found
- suffix=$(echo ${production_version} | sed "s/${version_regex}/\2/g")
- |
if [ -n "${suffix}" ]; then
echo "Could not resolve the production version from ${old_version}. Left with ${production_version} and ${suffix}."
exit 1
fi
- developer_version=${production_version}+dev
# Tag production commit and previous developer commit. Continue if already tagged.
- git config user.name "${GITLAB_USER_NAME}"
- git config user.email "${GITLAB_USER_EMAIL}"
- git remote add oauth2-origin https://gitlab-ci-token:${GITLAB_ACCESS_TOKEN}@re-git.lanl.gov/${CI_PROJECT_PATH}.git
- git tag -a ${production_version} -m "production release ${production_version}" || true
# Assume last merge was dev->main. Pick previous.
- last_merge_hash=$(git log --pretty=format:"%H" --merges -n 2 | tail -n 1)
- git tag -a ${developer_version} -m "developer pre-release ${developer_version}" ${last_merge_hash} || true
- git push oauth2-origin --tags
tags:
- shell-aea
fast-test:
stage: test
rules:
- if: '$CI_PIPELINE_SOURCE == "merge_request_event"'
variables:
GIT_STRATEGY: clone
rules:
- if: $CI_PIPELINE_SOURCE == "schedule"
- if: $CI_PIPELINE_SOURCE == "merge_request_event"
- if: $CI_COMMIT_BRANCH == "main"
- if: $CI_COMMIT_BRANCH == "dev"
script:
- workdir=${PWD}
- mkdir build
- cd build
- cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib
- cmake --build . --target all --verbose
- ctest --verbose --output-log results.txt
- cd ${workdir}
artifacts:
when: always
paths:
- build/results.txt
tags:
- shell-aea
conda-build:
stage: build
variables:
GIT_STRATEGY: clone
dependencies: []
rules:
- if: $CI_PIPELINE_SOURCE == "schedule"
- if: $CI_PIPELINE_SOURCE == "merge_request_event"
- if: $CI_COMMIT_BRANCH == "main"
- if: $CI_COMMIT_BRANCH == "dev"
script:
# Only build one compiler variant during merge request testing
- libstdcxx="13"
- variants=""
- if [[ $CI_PIPELINE_SOURCE == "merge_request_event" ]]; then variants="--variants {'libstdcxx':['${libstdcxx}']}"; fi
# Set the LANL internal proxies
- export ALL_PROXY="proxyout.lanl.gov:8080"
- export HTTP_PROXY="http://$ALL_PROXY"
- export HTTPS_PROXY=$HTTP_PROXY
# Override default permissions. Set group to rx with no write permissions.
- umask 0022
- mkdir ${conda_artifacts_directory}
- croot="/scratch/$USER/$(basename $PWD)/${conda_artifacts_directory}"
# TODO: Return to 'conda build' after tracing conda issue: https://re-git.lanl.gov/aea/material-models/tardigrade_vector_tools/-/issues/12
- VERSION=$(python -m setuptools_scm) mamba build recipe ${conda_channels} --override-channels --no-anaconda-upload --croot ${croot} --output-folder ${conda_artifacts_directory} ${variants}
- mamba build purge --croot ${croot}
artifacts:
expire_in: '2 hrs'
paths:
- conda-bld/linux-64/tardigrade_vector_tools-*-*.tar.bz2
tags:
- shell-aea
deploy:
stage: deploy
variables:
GIT_STRATEGY: clone
dependencies:
- conda-build
rules:
- if: $CI_PIPELINE_SOURCE == "schedule"
when: never
- if: $CI_COMMIT_BRANCH == "main"
- if: $CI_COMMIT_BRANCH == "dev"
script:
# Override default permissions. Set group to rx with no write permissions.
- umask 0022
# Copy Conda package to AEA Conda Channel
- cp ${conda_artifacts_directory}/linux-64/tardigrade_vector_tools-*-*.tar.bz2 ${aea_conda_channel}/linux-64
# Change group for access by all W-13 staff and prevent accidental modification by institutional account in CI jobs
- chgrp w13users ${aea_conda_channel}/linux-64/tardigrade_vector_tools-*-*.tar.bz2 || true
- chmod 555 ${aea_conda_channel}/linux-64/tardigrade_vector_tools-*-*.tar.bz2 || true
# Update the AEA Conda Channel index
# TODO: Return to 'conda index/search' after tracing conda issue: https://re-git.lanl.gov/aea/material-models/tardigrade_vector_tools/-/issues/12
- mamba index ${aea_conda_channel}
- mamba search --channel file://${aea_conda_channel}/ --override-channels tardigrade_vector_tools
tags:
- sstelmo-shell-aea
# It MUST be called pages
pages:
stage: deploy
variables:
GIT_STRATEGY: clone
dependencies: []
rules:
- if: $CI_PIPELINE_SOURCE == "schedule"
when: never
- if: $CI_COMMIT_BRANCH == "main"
script:
- workdir=${PWD}
- mkdir -p public/doxygen
- mkdir -p build
- cd build
- cmake ..
- cmake --build . --target Sphinx
- cd ${workdir}
- cp -r build/docs/sphinx/html/* public/
- cp -r build/docs/doxygen/html/* public/doxygen
artifacts:
paths:
# It MUST be called public
- public
tags:
- shell-aea