Feature request: Add body crop

[ayalalazaro]

TotalSegmentator and SlicerTotalSegmentator are awesome, congratulations for the great job! We are currently testing it for autosegmentation in radiation oncology. We use 8GB GPUs which sometimes fails to allocate all the memory with big studysets. It turns out that the TotalSegmentation option '--body_seg' makes the process error free and takes less time as well.
We have modified SlicerTotal to always use this option, can it be added to the extension maybe just as the --fast option is currently implemented?

[lassoan]

can it be added to the extension maybe just as the --fast option is currently implemented?

Exactly. Would you like to give it a try to implement it? You can add the checkbox in Qt designer and get the checkbox value the same way as it is done for the fast mode checkbox.

[ayalalazaro]

I am fairly new to 3d slicer, but I can give it a try, sure!

…

-------- Mensaje original -------- El 16 mar 2023 14:46, Andras Lasso escribió:

> can it be added to the extension maybe just as the --fast option is currently implemented? Exactly. Would you like to give it a try to implement it? You can add the checkbox in Qt designer and get the checkbox value the same way as it is done for the fast mode checkbox. — Reply to this email directly, [view it on GitHub](#19 (comment)), or [unsubscribe](https://github.com/notifications/unsubscribe-auth/ACCVXCEP6K5RAL52KFE7A6DW4MKURANCNFSM6AAAAAAV44WCDA). You are receiving this because you authored the thread.Message ID: ***@***.***>

[lassoan]

Maybe you don't need it (because the work is mostly doing the same what is done for the fast mode), but if you were interested, here is a programming introduction tutorial for Slicer: https://github.com/PerkLab/PerkLabBootcamp/blob/master/Doc/day3_2_SlicerProgramming.pptx