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env-velocyto.yml
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name: velocyto
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
- atk=2.25.90=hb9dd440_1002
- blas=1.1=openblas
- ca-certificates=2018.11.29=ha4d7672_0
- cairo=1.16.0=ha4e643d_1000
- certifi=2018.11.29=py36_1000
- click=7.0=py_0
- cycler=0.10.0=py_1
- cython=0.29.3=py36hf484d3e_0
- dbus=1.13.0=h4e0c4b3_1000
- expat=2.2.5=hf484d3e_1002
- fontconfig=2.13.1=h2176d3f_1000
- freetype=2.9.1=h94bbf69_1005
- gdk-pixbuf=2.36.12=h49783d7_1002
- gettext=0.19.8.1=h9745a5d_1001
- glib=2.58.2=hf63aee3_1001
- gobject-introspection=1.58.2=py36h2da5eee_1000
- graphite2=1.3.13=hf484d3e_1000
- gstreamer=1.14.4=h66beb1c_1001
- gtk2=2.24.31=hb68c50a_1001
- h5py=2.9.0=nompi_py36hf008753_1102
- harfbuzz=2.3.0=h6824563_1001
- hdf5=1.10.4=nompi_h11e915b_1105
- icu=58.2=hf484d3e_1000
- jpeg=9c=h14c3975_1001
- kiwisolver=1.0.1=py36h6bb024c_1002
- libffi=3.2.1=hf484d3e_1005
- libgcc-ng=7.3.0=hdf63c60_0
- libgfortran-ng=7.2.0=hdf63c60_3
- libiconv=1.15=h14c3975_1004
- libpng=1.6.36=h84994c4_1000
- libstdcxx-ng=7.3.0=hdf63c60_0
- libtiff=4.0.10=h648cc4a_1001
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.8=h143f9aa_1005
- llvmlite=0.26.0=py36hdbcaa40_1000
- matplotlib=3.0.2=py36_1002
- matplotlib-base=3.0.2=py36h167e16e_1002
- ncurses=6.1=hf484d3e_1002
- numba=0.41.0=py36h637b7d7_1000
- numpy=1.16.0=py36_blas_openblash1522bff_1000
- openblas=0.3.3=h9ac9557_1001
- openssl=1.0.2p=h14c3975_1002
- pango=1.40.14=h4ea9474_1004
- pcre=8.41=hf484d3e_1003
- pip=19.0.1=py36_0
- pixman=0.34.0=h14c3975_1003
- pthread-stubs=0.4=h14c3975_1001
- pyparsing=2.3.1=py_0
- pyqt=5.6.0=py36h13b7fb3_1008
- python=3.6.7=hd21baee_1001
- python-dateutil=2.7.5=py_0
- qt=5.6.2=hce4f676_1013
- readline=7.0=hf8c457e_1001
- scikit-learn=0.20.2=py36_blas_openblashebff5e3_1400
- scipy=1.2.0=py36_blas_openblash1522bff_1201
- setuptools=40.7.1=py36_0
- sip=4.18.1=py36hf484d3e_1000
- six=1.12.0=py36_1000
- sqlite=3.26.0=h67949de_1000
- tk=8.6.9=h84994c4_1000
- tornado=5.1.1=py36h14c3975_1000
- wheel=0.32.3=py36_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.9=h14c3975_1004
- xorg-libsm=1.2.3=h4937e3b_1000
- xorg-libx11=1.6.6=h14c3975_1000
- xorg-libxau=1.0.8=h14c3975_1006
- xorg-libxdmcp=1.1.2=h14c3975_1007
- xorg-libxext=1.3.3=h14c3975_1004
- xorg-libxrender=0.9.10=h14c3975_1002
- xorg-libxt=1.1.5=h14c3975_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h14c3975_1004
- pip:
- loompy==2.0.16
- pandas==0.24.0
- pysam==0.15.2
- pytz==2018.9
- velocyto==0.17.16
prefix: /group/bioi1/luke/miniconda2/envs/velocyto