Dockerfile

# Use base rocker image for shiny server and R
FROM rocker/shiny:4.0.5

# Make shiny server directory
RUN mkdir -p /srv/shiny-server

# Get system libraries
RUN apt-get update
RUN apt-get install -y \
    git \
    vim \
    libcurl4-gnutls-dev \
    libssl-dev \
    libxml-parser-perl

# Install R packages
RUN R -e 'install.packages("devtools", repos="http://cran.us.r-project.org", dependencies = TRUE)'
RUN R -e 'install.packages("shiny", version = "1.7.1", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("visNetwork", version = "2.1.0", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("igraph", version = "1.3.5", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("dplyr", version = "1.0.2", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("shinyBS", version = "0.61", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("shinythemes", version = "1.2.0", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("shinydashboard", version = "0.7.2", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("shinydashboardPlus", version = "2.0.3", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("shinyWidgets", version = "0.7.4", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("shinyjs", version = "2.1.0", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("shinyalert", version = "2.1.0", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("data.table", version = "2.1.0", repos="http://cran.us.r-project.org")'
RUN R -e 'install.packages("BANN")'

# Copy contents of all multio-viz directories, keeping directory structure
RUN cd /tmp 
RUN git clone https://github.com/lcrawlab/BANNs.git
RUN R CMD INSTALL BANNs/BANN_R/BANN_0.1.0.tar.gz
RUN mv BANNs /srv/shiny-server
ARG CACHEBUST=0
RUN if [ -z "$CACHEBUST" ]; then echo "using cache"; else git clone https://github.com/lcrawlab/multio-viz.git; fi
RUN mv multio-viz/* /srv/shiny-server
RUN mv /srv/shiny-server/app/* /srv/shiny-server
# Rscript load_multioviz.R

# # Run app
EXPOSE 3838
CMD ["/usr/bin/shiny-server"]