QC improvements

[glormph]

Add stuff:

• plot ly plots for the svg ones
• add more report data (versions, input files etc)
• ion injection time violin plots per fraction
• PCA on BOTH sets and groups when having deqms, not only groups
• use max amount of PSMs in step plots and overview table
• in LF etc add a legend to encode setnames which can get too long and compress the plot, test with big LF batch to see result
• use different palet for colors in isobaric plot
• Tables with numbers and % of missed cleavages, of PSMs IDed per MS2 scans, of the overall protein coverage, Identifications

@kbarylyuk @rui-branca

[glormph]

I have tested using plotly in pgt and now I more or less know how to do that, look there for inspiration.