Please Note If you are installing Commerce Bug 2 over Commerce Bug 1, it is necessary to manually remove all files related to Commerce Bug 1. If you require assistance, please contact Pulse Storm Support: http://www.pulsestorm.net/contact-us/
Commerce Bug 2 is distributed as a Magento Connect 2 extension. You'll find it in the zip file you downloaded with an name something like
Packagename_Commercebug-2.x-x.tgz
Where "Packagename" is the customized Magento package name for your extension.
This package may be installed in a Magento system using the Magento Connect manager. If the Magento connect manager is unavailable on your system, you can install the extension manually by un-taring the tgz file and following the remaining steps in the README file.
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Copy/Upload the contents of the "app" folder to the corresponding "app" folder of your Magento system
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Copy/Upload the contents of the "js" folder to the corresponding "js" folder of your Magento system
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Ensure the uploaded files and folders have *nix permissions, ownership and groups identical to the rest of your Magento files and folder
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Clear the Magento Cache (including javascript/CSS cache). This may be done under [System -> Cache Management]
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Log out of the Magento Admin Application to clear you admin session. This is necessary to grant admin super users the correct access permissions to view Commerce Bug's system configuration.
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If you're using compilation, re-compile your classes.
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Configure Commerce Bug (update notifications, output, etc.) at System -> Configuration -> Advanced -> Commerce Bug