From a8dd717f530ae10268a1ff17d96a0c42455a00a4 Mon Sep 17 00:00:00 2001
From: cgpu <chatzipantsiou@gmail.com>
Date: Fri, 16 Jul 2021 17:53:09 +0100
Subject: [PATCH] Adds cli option

---
 nextflow.config | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/nextflow.config b/nextflow.config
index 8fe1846..be67ba8 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -44,6 +44,9 @@ params {
 	// values defined in conf/google.config
 	gls_copyImage = false
 	gls_sshImage = false
+
+	aws_batch_cli_path = '/home/ec2-user/miniconda/bin/aws'
+	aws_batch_fetch_instance_type = true
 }
 
 // Do not update the order because the values set in params scope will not be overwritten
@@ -79,3 +82,6 @@ manifest {
     description = 'A stampede of processes at your fingertips'
     mainScript = params.mainScript
 }
+
+aws.batch.cliPath = params.aws_batch_cli_path
+aws.batch.fetchInstanceType = params.aws_batch_fetch_instance_type
\ No newline at end of file