diff --git a/workflows/cellranger/cellranger_workflow.wdl b/workflows/cellranger/cellranger_workflow.wdl index 7f301a93..9773f828 100644 --- a/workflows/cellranger/cellranger_workflow.wdl +++ b/workflows/cellranger/cellranger_workflow.wdl @@ -594,7 +594,7 @@ task generate_bcl_csv { sys.exit(1) if ('Link' in row) and pd.notnull(row['Link']) and (row['Link'] != ''): multiomics[row['Link']].add(row['DataType']) - if row['DataType'] in ['vdj', 'adt', 'citeseq', 'hashing', 'cmo', 'crispr']: + if row['DataType'] in ['vdj', 'adt', 'citeseq', 'hashing', 'cmo', 'crispr', 'frp']: row['DataType'] = 'rna' if re.search('[^a-zA-Z0-9_-]', row['Sample']) is not None: print('Sample must contain only alphanumeric characters, hyphens, and underscores.', file = sys.stderr)