From ecdd60dcf910ed0056006981d9eacf8ba48c92a0 Mon Sep 17 00:00:00 2001 From: Yiming Yang Date: Thu, 17 Nov 2022 15:42:25 -0800 Subject: [PATCH] Handle 'frp' data type in generate_bcl_csv task --- workflows/cellranger/cellranger_workflow.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/cellranger/cellranger_workflow.wdl b/workflows/cellranger/cellranger_workflow.wdl index 173d3fed..4df85dfc 100644 --- a/workflows/cellranger/cellranger_workflow.wdl +++ b/workflows/cellranger/cellranger_workflow.wdl @@ -594,7 +594,7 @@ task generate_bcl_csv { sys.exit(1) if ('Link' in row) and pd.notnull(row['Link']) and (row['Link'] != ''): multiomics[row['Link']].add(row['DataType']) - if row['DataType'] in ['vdj', 'adt', 'citeseq', 'hashing', 'cmo', 'crispr']: + if row['DataType'] in ['vdj', 'adt', 'citeseq', 'hashing', 'cmo', 'crispr', 'frp']: row['DataType'] = 'rna' if re.search('[^a-zA-Z0-9_-]', row['Sample']) is not None: print('Sample must contain only alphanumeric characters, hyphens, and underscores.', file = sys.stderr)