From 65b8a1dccccd9bfa2d68c73a936a6cb53ca1dd49 Mon Sep 17 00:00:00 2001 From: Yiming Yang Date: Tue, 2 Feb 2021 23:31:55 -0500 Subject: [PATCH] update docs for pegasus-terra image --- docker/pegasus-terra/CHANGELOG.md | 16 +++++++++------- docker/pegasus-terra/README.md | 4 ++-- 2 files changed, 11 insertions(+), 9 deletions(-) diff --git a/docker/pegasus-terra/CHANGELOG.md b/docker/pegasus-terra/CHANGELOG.md index 14430168..5445bb98 100644 --- a/docker/pegasus-terra/CHANGELOG.md +++ b/docker/pegasus-terra/CHANGELOG.md @@ -1,14 +1,20 @@ # Changelog of Pegasus-Terra Docker Image +## 1.3 - 2020/02/02 + +* Image based on [terra-jupyter-base](https://github.com/DataBiosphere/terra-docker/tree/master/terra-jupyter-base) image version 0.0.19 at ``us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:0.0.19``. +* Use Pegasus 1.3.0. See [here](https://pegasus.readthedocs.io/en/stable/release_notes.html#version-1-3) for changes. +* Update dependency packages. + +Image URL: ``cumulusprod/pegasus-terra:1.3`` + ## 1.2 - 2020/12/26 * Image based on [terra-jupyter-base](https://github.com/DataBiosphere/terra-docker/tree/master/terra-jupyter-base) image version 0.0.18 at ``us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:0.0.18``. * Use Pegasus 1.2.0. See [here](https://pegasus.readthedocs.io/en/stable/release_notes.html#version-1-2) for new features. * Update dependency packages. -Image URL: ``quay.io/cumulus/pegasus-terra:1.2`` - -Backup image URL: ``cumulusprod/pegasus-terra:1.2`` +Image URL: ``cumulusprod/pegasus-terra:1.2`` ## 1.0 - 2020/07/21 (Latest update on 2020/09/22) @@ -19,8 +25,6 @@ Backup image URL: ``cumulusprod/pegasus-terra:1.2`` Image URL: ``cumulusprod/pegasus-terra:1.0`` -Backup image URL: ``quay.io/cumulus/pegasus-terra:1.0`` - ## 0.17 - 2020/04/28 (Latest update on 2020/07/19) * Image based on [terra-jupyter-base](https://github.com/DataBiosphere/terra-docker/tree/master/terra-jupyter-base) image version 0.0.9 at ``us.gcr.io/broad-dsp-gcr-public/terra-jupyter-base:0.0.9``. @@ -28,5 +32,3 @@ Backup image URL: ``quay.io/cumulus/pegasus-terra:1.0`` * Update dependency packages. Image URL: ``cumulusprod/pegasus-terra:0.17`` - -Backup image URL: ``quay.io/cumulus/pegasus-terra:0.17`` diff --git a/docker/pegasus-terra/README.md b/docker/pegasus-terra/README.md index ed6518e6..a6a4fca8 100644 --- a/docker/pegasus-terra/README.md +++ b/docker/pegasus-terra/README.md @@ -6,7 +6,7 @@ Pegasus is a Python package for analyzing transcriptomes of large-scale single-c |Image Version|Docker Image URL|Release Date|Last Modified| |---|---|---|---| -|1.2|cumulusprod/pegasus-terra:1.2|2020/12/26|2020/12/26| +|1.3|cumulusprod/pegasus-terra:1.3|2020/02/02|2020/02/02| ## Image Content @@ -18,7 +18,7 @@ Besides the basic environment in terra-jupyter-base image, we also add the follo * [Harmony-Pytorch](https://github.com/lilab-bcb/harmony-pytorch) and its dependency [PyTorch](https://pytorch.org/): Python version of Harmony algorithm on single-cell sequencing data integration. * [Cirrocumulus](https://cirrocumulus.readthedocs.io): Cloud-based interactive data visualizer. -To see a complete list of image content, please see its [Dockerfile](https://raw.githubusercontent.com/klarman-cell-observatory/cumulus/master/docker/pegasus-terra/1.2/Dockerfile). +To see a complete list of image content, please see its [Dockerfile](https://raw.githubusercontent.com/klarman-cell-observatory/cumulus/master/docker/pegasus-terra/1.3/Dockerfile). ## Use Pegasus on Terra