Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Search is broken when same strings of text overlap #652

Open
osowiecki opened this issue Aug 11, 2024 · 0 comments
Open

Search is broken when same strings of text overlap #652

osowiecki opened this issue Aug 11, 2024 · 0 comments

Comments

@osowiecki
Copy link

 * Xed version (xed --version) 3.6.6
 * Distribution -Linuxmint
Description:	Linux Mint 22
Release:	22
Codename:	wilma

Issue

Search for "AGTCCCTCAAG" in XED. It will fail to find "AGTCCCTCAAG" in "AGTCCCTCAAGTCCCTCAAG". This is also broken in latest Firefox...

Steps to reproduce

Substring: 'AGTCCCTCAAG (forward) (length: 11)'
Occurs 2 times forward in the target sequence
Forward occurrence in reference sequence: 1
Reversed occurrence in reference sequence: 0
Total occurrences in reference sequence: 1
Unmasked target sequence: AGTCCCTCAAGTCCCTCAAGCCGCCACCGCCGCC
Unmasked target sequence: AGTCCCTCA
AGTCCCTCAAGCCGCCACCGCCGCC
Masked target sequence: ***********TCCCTCAAGCCGCCACCGCCGCC
Unmasked reference sequence: AGTCCCTCAAGT
Masked reference sequence: ***********T

Expected behaviour

Find "AGTCCCTCAAG" twice

Other information

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant