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Dockerfile
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# % Last Change: Tue Jan 07 11:58:35 AM 2020 CST
# Base Image
FROM continuumio/miniconda3:4.7.12
# Metadata
LABEL software="genomic data analysis" \
description="docker image for general genomic data analysis" \
website="https://github.com/litd/dana" \
documentation="https://github.com/litd/dana" \
license="https://github.com/litd/dana" \
tags="Genomics" \
maintainer="Tiandao Li <[email protected]>"
ENV PATH /opt/conda/bin:$PATH
# Installation
RUN conda install -c bioconda bcftools && \
conda install -c bioconda bedtools && \
conda install -c bioconda htslib && \
conda install -c bioconda samtools && \
conda clean --all --yes
WORKDIR /opt/conda/bin
RUN wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedSort
RUN chmod +x bedSort
# set timezone, debian and ubuntu
RUN ln -sf /usr/share/zoneinfo/America/Chicago /etc/localtime && \
echo "America/Chicago" > /etc/timezone
CMD [ "/bin/bash" ]