Pin versions for docker images

[nielstron]

Describe the bug

Some docker images are failing due to lack of pinned versions. This is a list from SWE-Bench cases (running updated for migrated fixes)

• scikit-learn__scikit-learn-25500
• pallets__flask-4045
• sphinx-doc__sphinx-11445
• Astropy and xarray fixes princeton-nlp/SWE-bench#184
•  Fix: Issues with yanked pkg types-setuptools princeton-nlp/SWE-bench#232 and Fix fix for yanked packages princeton-nlp/SWE-bench#236

Steps/Code to Reproduce

python -m src.main --predictions_path gold --max_workers 1 --run_id validate-gold --instance_ids <affected_instance>

Expected Results

Should succeed in building

Actual Results

May fail due to missing pin of dependencies

System Information

No response