From 22780aad0beb1ceca9e0675a28a01d1a5f4af39c Mon Sep 17 00:00:00 2001 From: John Sterrett Date: Thu, 5 Sep 2024 16:54:46 -0600 Subject: [PATCH] set to list to keep up with bumped version of dependency in indexing --- SCNIC/annotate_correls.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/SCNIC/annotate_correls.py b/SCNIC/annotate_correls.py index 31deffc..861234b 100644 --- a/SCNIC/annotate_correls.py +++ b/SCNIC/annotate_correls.py @@ -154,7 +154,7 @@ def do_annotate_correls(correls_loc, tre_loc, genome_loc, module_loc, output_loc correls_tip_tips = tre.tip_tip_distances(set([otu for otu_pair in correls.index for otu in otu_pair])) print("read tree") genome_frame = pd.read_csv(genome_loc, sep='\t', index_col=0) - genome_table = genome_frame_to_table(genome_frame, set([otu for otu_pair in correls.index for otu in otu_pair])) + genome_table = genome_frame_to_table(genome_frame, list(set([otu for otu_pair in correls.index for otu in otu_pair]))) print("read table") if modules_to_keep_loc is not None: modules_to_keep = get_modules_to_keep(modules_to_keep_loc)