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Describe loci in a scheme #34

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lskatz opened this issue Apr 28, 2023 · 0 comments
Open

Describe loci in a scheme #34

lskatz opened this issue Apr 28, 2023 · 0 comments

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@lskatz
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lskatz commented Apr 28, 2023

Need file to describe all the loci in a scheme. Otherwise callers cannot output a proper profiles file and know all the loci it missed. I'm sure there are other reasons.

One way to do this would be to make it a yaml file and define the yaml file in the spec.

Here is a first shot at it.

scheme: senterica
  - loci:
    - aroC
    - dnaN
    - hemD
    - hisD
    - purE
    - sucA
    - thrA

I could potentially add in locus properties too, following what BigsDB does as shown here:
image

And more context here.

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