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additional_data.md

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Links to additional data

Official - International

Centers for Disease Control and Prevention - list of countries with active local transmission

Pan American Health Organization - situation reports

Pan American Health Organization - epidemic curves dataset AND a machine readable version: https://github.com/cmrivers/zika/blob/master/paho_epicurves.csv

World Health Organization - situation reports

European Centre for Disease Prevention and Control - situation reports

Official - Country

Centers for Disease Control and Prevention - United States data

Genetic

National Center for Biotechnology Information - GenBank - sequence data

Virus Pathogen Resource - sequence data

University of Wisconsin-Madison - sequence and alignment data

Uniprot - unreviewed protein data

nextstrain - virus phylogeny

Experimental data

University of Wisconsin-Madison - viral shedding in rhesus macaques

Aggregate news and data

Models of Infectious Disease Agent Study - various Zika-related reports

BuzzFeed - machine-readable data

Flutrackers - news and commentary

HealthMap - news and official reports