ci.yml

name: Tests

on: [push]

jobs:
  code:
    name: Code
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        task: [flake8, black, isort]
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python 3.8
        uses: actions/setup-python@v2
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          pip install --upgrade pip
          pip install tox
      - name: Run task
        run: tox -e ${{ matrix.task }}

  manifest:
    name: Check Manifest
    needs: code
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - name: Set up Python 3.8
        uses: actions/setup-python@v2
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          pip install --upgrade pip
          pip install check-manifest
      - name: Check Manifest
        run: check-manifest

  test:
    needs: code
    name: ${{ matrix.platform }} py${{ matrix.python }} ${{ matrix.toxenv }}
    runs-on: ${{ matrix.platform }}
    strategy:
      fail-fast: false
      matrix:
        platform: [ubuntu-latest, windows-latest, macos-latest]
        python: [3.7, 3.8, 3.9]

    steps:
      - uses: actions/checkout@v2

      - name: Set up Python ${{ matrix.python }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python }}

      - name: Install dependencies
        run: |
          pip install --upgrade pip
          pip install setuptools tox tox-gh-actions

      # here we pass off control of environment creation and running of tests to tox
      # tox-gh-actions, installed above, helps to convert environment variables into
      # tox "factors" ... limiting the scope of what gets tested on each platform
      # The one exception is if the "toxenv" environment variable has been set,
      # in which case we are declaring one specific tox environment to run.
      # see tox.ini for more
      - name: Test with tox
        run: tox
        env:
          PLATFORM: ${{ matrix.platform }}
          TOXENV: ${{ matrix.toxenv }}

#  test_pip_install:
#    name: ubuntu-latest 3.8 pip install
#    runs-on: ubuntu-latest
#    steps:
#      - name: Set up Python 3.8
#        uses: actions/setup-python@v2
#        with:
#          python-version: 3.8
#
#      - name: Install this commit
#        run: |
#          # pip install this git sha directly from github
#          pip install --upgrade pip
#          pip install git+git://github.com/${{ github.repository }}.git@${{ github.sha }}#egg=msalign[testing]
#
#      - name: Test
#        run: pytest --pyargs msalign --color=yes

  coverage:
    name: "Coverage"
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@master
      - name: Set up Python
        uses: actions/setup-python@v1
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          pip install --upgrade pip
          pip install ".[testing]"
      - name: Test with pytest
        run: |
          pytest --cov=msalign
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v1

  install-dev:
    strategy:
      max-parallel: 4
      matrix:
        os: [ubuntu-latest, windows-latest, macOS-latest]

    name: "Verify installation on ${{ matrix.os }}."
    runs-on: "${{ matrix.os }}"

    steps:
      - uses: "actions/checkout@v2"
      - uses: "actions/setup-python@v1"
        with:
          python-version: "3.7"
      - name: Install
        run: |
          pip install -e .
          python -c 'import msalign; print(msalign.__version__)'

  deploy:
    needs: [test]
    name: "Deploy"
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@master
      - name: Set up Python
        uses: actions/setup-python@v1
        with:
          python-version: 3.8
      - name: Install dependencies
        run: |
          pip install --upgrade pip  # || pip3 install --upgrade pip
          pip install ".[deploy]"
      - name: Build package
        run: |
          python setup.py sdist bdist_wheel --universal
      - name: Publish to Test PyPI
        uses: pypa/gh-action-pypi-publish@master
        if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
        with:
          user: __token__
          password: ${{ secrets.pypi_test_password }}
          repository_url: https://test.pypi.org/legacy/
      - name: Publish to PyPI
        uses: pypa/gh-action-pypi-publish@master
        if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
        with:
          user: __token__
          password: ${{ secrets.pypi_password }}