Notes on Pipeline

[m-orton]

Hi Sally, you will see I just added the pipeline, I still dont have filtering by shapefile but I did manage to incorporate the private data into the accumulation curve so there is a section of code for that now.

[m-orton]

Also, I updated the workspace in dropbox with the curves so if you load up the workspace, you should be able to see the new curves - they look much better now! Palearctic has almost 10K records to show now.

[m-orton]

Also loaded images of the curves in dropbox.

[m-orton]

Hi Sally, just letting you know, I got the vegan analysis to work with the code you sent. I also got axis labels for the plot and a check for overlapping process ids between public/private. The new code has been posted to github and dropbox. Currently uploading the workspace.

For tomorrow I just have to get lines on the map, chose the color scheme for figures and maybe finish the venn diagrams if there is time. We will also have to run the 100 replicates.

Best Regards,
Matt

[sadamowi]

That's great Matt! Great work. Did you want me to help run the curves? Sent from Samsung Mobile

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-------- Original message -------- From: Matthew Orton Date:11-02-2017 12:40 AM (GMT-05:00) To: m-orton/ChironomidProject Cc: Subscribed Subject: Re: [m-orton/ChironomidProject] Notes on Pipeline (#1) Hi Sally, just letting you know, I got the vegan analysis to work with the code you sent. I also got axis labels for the plot and a check for overlapping process ids between public/private. The new code has been posted to github and dropbox. Currently uploading the workspace. For tomorrow I just have to get lines on the map, chose the color scheme for figures and maybe finish the venn diagrams if there is time. We will also have to run the 100 replicates. Best Regards, Matt — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#1 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AV89OgTBg0Scgg15GO-sHBijjUIMvBAIks5syUeqgaJpZM4QKLdO>.

[m-orton]

Hi Sally, that would be great if you could run the curves.

Best Regards,
Matt

[m-orton]

Hi Sally, just letting you know I just uploaded my figures to dropbox which I plan on showing to Torb and Elisabeth tomorrow.

I went with a color set of green, blue and vermillion since these are good for color blind people based on what I've read (but we can check with Karl just to be sure). I can always change the colors though based on feedback.

For the map figure, I actually couldnt set the line types (plotly has changed their API since I last used it and dont support that feature anymore) so I just distinguished the lines by color instead. I put the chao values in the legend since it was easier than annotating the lines themselves. Hopefully everyone likes the figures!

I didnt put titles since you mentioned that would be in the figure legend instead.

Best Regards,
Matt