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make IGV use local hg19.fasta #6

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lituan opened this issue Oct 20, 2018 · 0 comments

lituan commented Oct 20, 2018

Hi,

I use following command on a linux server but got errors, " failed for url: http://dn7ywbm9isq8j.cloudfront.net/genomes/seq/hg19/hg19.fasta.gz"

but the server is not connect to internet, so can igv_plotter use a local reference fasta as IGV?

igv_plotter
-v
-o test
-g hg19.genome
--igv-jar-path ./IGV_2.4.14/lib/igv.jar
test.bam
chr17:7572314

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