diff --git a/R/dviJoint.R b/R/dviJoint.R index a8d5898..f5e6c5a 100644 --- a/R/dviJoint.R +++ b/R/dviJoint.R @@ -23,12 +23,7 @@ #' @param verbose A logical. #' @param progress A logical, indicating if a progress bar should be shown. #' -#' @return A list of data frame: -#' * `joint`: TODO -#' * `GLRmatrix`: A matrix whose entry (i,j) is the generalised LR for the -#' pairing `V_i = M_j`, based on the joint likelihoods. -#' * `summary`: A summary of the pairings for which `GLR > threshold`. -#' +#' @return A data frame. #' @examples #' dviJoint(example2) #' @@ -36,8 +31,6 @@ dviJoint = function(dvi, assignments = NULL, ignoreSex = FALSE, disableMutations = FALSE, maxAssign = 1e5, numCores = 1, cutoff = 0, verbose = TRUE, progress = verbose) { - st = Sys.time() - # Ensure proper dviData object dvi = consolidateDVI(dvi)