From b67d92db9b7eff117297bfab8c3e45b8fefe776b Mon Sep 17 00:00:00 2001 From: Kyle McChesney Date: Wed, 27 Mar 2024 13:00:47 -0600 Subject: [PATCH 1/2] Add bages and docs links --- README.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/README.md b/README.md index b1bb59d..655efc8 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,14 @@ # palamedes +![Merge - Passing](https://github.com/mammothbio-os/palamedes/actions/workflows/merge.yaml/badge.svg) ![Release - Passing](https://github.com/mammothbio-os/palamedes/actions/workflows/release.yaml/badge.svg) ![PyPI - Version](https://img.shields.io/pypi/v/palamedes) ![Read The Docs - Version](https://readthedocs.org/projects/mammothbio-os-palamedes/badge/?version=stable) + This repo contains a python package and CLI entrypoint which can be used to generate a list of [HGVS](https://github.com/biocommons/hgvs) variants representing the difference between 2 sequences, using a global alignment. The idea is to leverage the HGVS spec for more applications, since it provides a solid framework for maintaining a consistent set of rules and logic around variants. +## Documentation + +Documentation for the project can be found [here](https://mammothbio-os-palamedes.readthedocs.io/en/stable/) + ## Installing Palamedes is packaged in PyPI, to install simply run: `pip install palamedes` From 69c8c9fab1793e713ea5daabf227c7c32e5fb867 Mon Sep 17 00:00:00 2001 From: Kyle McChesney Date: Wed, 27 Mar 2024 13:00:52 -0600 Subject: [PATCH 2/2] =?UTF-8?q?Bump=20version:=200.0.2=20=E2=86=92=200.0.3?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 2 +- palamedes/__init__.py | 2 +- setup.py | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 22dd0fe..f9228c6 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.0.2 +current_version = 0.0.3 commit = True tag = False diff --git a/palamedes/__init__.py b/palamedes/__init__.py index f727090..506fef3 100644 --- a/palamedes/__init__.py +++ b/palamedes/__init__.py @@ -8,7 +8,7 @@ from palamedes.hgvs.builders import BUILDER_CONFIG -__version__ = "0.0.2" +__version__ = "0.0.3" def generate_hgvs_variants( diff --git a/setup.py b/setup.py index d8ae14a..5de694c 100644 --- a/setup.py +++ b/setup.py @@ -1,6 +1,6 @@ from setuptools import find_packages, setup -version = "0.0.2" +version = "0.0.3" setup( name="palamedes",