From 8c10cda145b0ae814709b6dab5e1df96ec947dec Mon Sep 17 00:00:00 2001 From: Damien Goutte-Gattat Date: Thu, 5 Dec 2024 11:38:00 +0000 Subject: [PATCH] Rename 'composed entity' to 'composed entity expression'. It is believed that 'composed entity expression' better conveys the idea that the entity being referred to is a composite entity, compared to 'composed entity' alone. --- CHANGELOG.md | 2 +- examples/schema/composite-entities.sssom.tsv | 6 +++--- src/sssom_schema/schema/sssom_schema.yaml | 2 +- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 0f505713..94b6da62 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,7 +2,7 @@ ## Next -- Add `composed entity` as a new value in the `EntityType` enumeration ([issue](https://github.com/mapping-commons/sssom/issues/402)). +- Add `composed entity expression` as a new value in the `EntityType` enumeration ([issue](https://github.com/mapping-commons/sssom/issues/402)). - TBD ## SSSOM version 1.0.0 diff --git a/examples/schema/composite-entities.sssom.tsv b/examples/schema/composite-entities.sssom.tsv index 1e6ff624..8550ec0d 100644 --- a/examples/schema/composite-entities.sssom.tsv +++ b/examples/schema/composite-entities.sssom.tsv @@ -7,6 +7,6 @@ #license: https://creativecommons.org/publicdomain/zero/1.0/ #comment: This is an example file for the SSSOM for illustration only. Its contents are entirely fabricated. subject_id predicate_id object_id mapping_justification subject_type -SCHEMA:0001/(disease:'MONDO:0005148',phenotype:'HP:0009124') skos:exactMatch MP:0000003 semapv:ManualMappingCuration composed entity -SCHEMA:0001/(disease:'MONDO:0005149',phenotype:'HP:0008551') skos:exactMatch MP:0000018 semapv:ManualMappingCuration composed entity -SCHEMA:0001/(disease:'MONDO:0005150',phenotype:'HP:0000411') skos:exactMatch MP:0000018 semapv:ManualMappingCuration composed entity +SCHEMA:0001/(disease:'MONDO:0005148',phenotype:'HP:0009124') skos:exactMatch MP:0000003 semapv:ManualMappingCuration composed entity expression +SCHEMA:0001/(disease:'MONDO:0005149',phenotype:'HP:0008551') skos:exactMatch MP:0000018 semapv:ManualMappingCuration composed entity expression +SCHEMA:0001/(disease:'MONDO:0005150',phenotype:'HP:0000411') skos:exactMatch MP:0000018 semapv:ManualMappingCuration composed entity expression diff --git a/src/sssom_schema/schema/sssom_schema.yaml b/src/sssom_schema/schema/sssom_schema.yaml index 060fead1..6bae0362 100644 --- a/src/sssom_schema/schema/sssom_schema.yaml +++ b/src/sssom_schema/schema/sssom_schema.yaml @@ -54,7 +54,7 @@ enums: meaning: rdfs:Datatype rdf property: meaning: rdf:Property - composed entity: + composed entity expression: description: This value indicates that the entity ID does not represent a single entity, but a composite involving several individual entities. This value MUST NOT be used in the predicate_type slot. This specifications does not prescribe how an ID representing a composite entity should be interpreted; this is left at the discretion of applications. see_also: - https://github.com/mapping-commons/sssom/issues/402