DESCRIPTION

Type: Package
Package: pgmap
Title: Obtain Counts for a Paired Guided CRISPR Screen
Version: 0.1.0
Authors@R: c(person("Candace", "Savonen", , c("cansav09@gmail.com","csavonen@fredhutch.org"), role = c("aut", "cre")))
Description: This package allows counts to be obtained from fastq files from a CRISPR paired guide screen. It is based off of original research from the Alice Berger lab at Fred Hutchinson Cancer Center.
License: GPL-3
URL: https://github.com/FredHutch/gimap
BugReports: https://github.com/FredHutch/gimap/issues
Imports:
 devtools,
 dplyr,
 purrr,
 utils,
 stats,
 stringr,
 furrr,
 tibble,
 fastmap,
 BiocManager,
 Rbowtie2,
 Rsamtools,
 tidyr
Suggests:
 testthat,
 roxygen2
Remotes:
 Bioconductor/Rhtslib,
 Bioconductor/Rsamtools,
 wzthu/Rbowtie2
Config/testthat/edition: 3
Encoding: UTF-8
RoxygenNote: 7.3.2
LazyData: true