diseaseModel.json

{
  "$schema": "https://raw.githubusercontent.com/NSSAC/EpiHiper-Schema/master/schema/diseaseModelSchema.json",
  "epiHiperSchema": "https://raw.githubusercontent.com/NSSAC/EpiHiper-Schema/master/schema/diseaseModelSchema.json",
  "states": [
    {
      "id": "S",
      "ann:label": "Susceptible",
      "infectivity": 0,
      "susceptibility": 1
    },
    {
      "id": "I",
      "ann:label": "Infectious",
      "infectivity": 1,
      "susceptibility": 0
    },
    {
      "id": "R",
      "ann:label": "Recovered",
      "infectivity": 0,
      "susceptibility": 0
    },
    {
      "id": "V",
      "ann:label": "Vaccinated Susceptible",
      "infectivity": 0,
      "susceptibility": 0.1
    },
    {
      "id": "wanedS",
      "ann:label": "Susceptible with waned natural immunity",
      "infectivity": 0,
      "susceptibility": 0.7
    },
    {
      "id": "wanedV",
      "ann:label": "Susceptible with waned prior vax immunity",
      "infectivity": 0,
      "susceptibility": 0.5
    }
  ],
  "initialState": "S",
  "transmissions": [
    {
      "id": "infection_I_S",
      "ann:label": "I infects S",
      "entryState": "S",
      "exitState": "I",
      "contactState": "I",
      "transmissibility": 1.0
    },
    {
      "id": "infection_I_V",
      "ann:label": "I infects V",
      "entryState": "V",
      "exitState": "I",
      "contactState": "I",
      "transmissibility": 1.0
    },
    {
      "id": "infection_I_wanedS",
      "ann:label": "I infects wanedS",
      "entryState": "wanedS",
      "exitState": "I",
      "contactState": "I",
      "transmissibility": 1.0
    },
    {
      "id": "infection_I_wanedV",
      "ann:label": "I infects wanedV",
      "entryState": "wanedV",
      "exitState": "I",
      "contactState": "I",
      "transmissibility": 1.0
    }
  ],
  "transitions": [
    {
      "id": "I_to_R",
      "ann:label": "Infectious to recovered",
      "entryState": "I",
      "exitState": "R",
      "probability": 1,
      "dwellTime": {
        "gamma": {
          "alpha": 1.0,
          "beta": 5.0
        }
      }
    },
    {
      "id": "R_to_wanedS",
      "ann:label": "Recovered to susceptible with waned natural immunity",
      "entryState": "R",
      "exitState": "wanedS",
      "probability": 1,
      "dwellTime": {
        "gamma": {
          "alpha": 1.0,
          "beta": 183.0
        }
      }
    },
    {
      "id": "V_to_wanedV",
      "ann:label": "Prior vax to susceptible with waned prior vax immunity",
      "entryState": "V",
      "exitState": "wanedV",
      "probability": 1,
      "dwellTime": {
        "gamma": {
          "alpha": 1.0,
          "beta": 122.0
        }
      }
    }
  ],
  "transmissibility": 1
}