From c937cd2297f84bed6dcf8d754f2d2773aeed9b62 Mon Sep 17 00:00:00 2001 From: frievoe97 Date: Tue, 27 Feb 2024 12:41:00 +0000 Subject: [PATCH] deploy: 8d2abc43435d37b5004c52c2477a67225c687f83 --- docs/404.html | 8 ++++---- docs/assets/css/0.styles.24d854a4.css | 1 - docs/assets/js/12.4ee895ef.js | 1 - docs/assets/js/13.396da266.js | 1 - docs/assets/js/15.5b5cf4b0.js | 1 + docs/assets/js/{3.27f3dcd3.js => 3.de92621b.js} | 2 +- docs/assets/js/4.e587c651.js | 1 - docs/assets/js/5.cd5596c7.js | 1 - docs/assets/js/{app.f5c69301.js => app.5a319769.js} | 8 ++++---- docs/config/index.html | 8 ++++---- docs/documentation/configuration.html | 8 ++++---- docs/documentation/index.html | 8 ++++---- docs/documentation/plots.html | 8 ++++---- docs/documentation/run-setup.html | 8 ++++---- docs/documentation/website.html | 8 ++++---- docs/index.html | 6 +++--- 16 files changed, 37 insertions(+), 41 deletions(-) delete mode 100644 docs/assets/css/0.styles.24d854a4.css delete mode 100644 docs/assets/js/12.4ee895ef.js delete mode 100644 docs/assets/js/13.396da266.js create mode 100644 docs/assets/js/15.5b5cf4b0.js rename docs/assets/js/{3.27f3dcd3.js => 3.de92621b.js} (99%) delete mode 100644 docs/assets/js/4.e587c651.js delete mode 100644 docs/assets/js/5.cd5596c7.js rename docs/assets/js/{app.f5c69301.js => app.5a319769.js} (94%) diff --git a/docs/404.html b/docs/404.html index 1f3b235f..373b0f0c 100644 --- a/docs/404.html +++ b/docs/404.html @@ -11,13 +11,13 @@ - - + + -

404

How did we get here?
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# Config

# foo

  • Type: string
  • Default: /

# bar

  • Type: string
  • Default: /
Last Updated: 2/27/2024, 12:32:48 PM
+ diff --git a/docs/documentation/configuration.html b/docs/documentation/configuration.html index 5e5f4aa2..a7bc5008 100644 --- a/docs/documentation/configuration.html +++ b/docs/documentation/configuration.html @@ -11,8 +11,8 @@ - - + +
COVID-SIM Documentation
Last Updated: 2/27/2024, 11:35:59 AM

+

Last Updated: 2/27/2024, 12:32:48 PM

← →

- + diff --git a/docs/documentation/index.html b/docs/documentation/index.html index 87d67f21..48a9dff3 100644 --- a/docs/documentation/index.html +++ b/docs/documentation/index.html @@ -11,19 +11,19 @@ - - + +
COVID-SIM Documentation

# Introduction

Here you can find all the information for covid-sim.info. Among other things, how you can set up a new run, what configuration options are available, etc.

Last Updated: 2/27/2024, 11:35:59 AM

+

# Introduction

Here you can find all the information for covid-sim.info. Among other things, how you can set up a new run, what configuration options are available, etc.

Last Updated: 2/27/2024, 12:32:48 PM

MATSim Episim →

- + diff --git a/docs/documentation/plots.html b/docs/documentation/plots.html index ee1feded..2a15de60 100644 --- a/docs/documentation/plots.html +++ b/docs/documentation/plots.html @@ -11,19 +11,19 @@ - - + +
COVID-SIM Documentation

# Plots

The results of the runs are shown in the plots below. The following plots are available for visualization. The RunId describes the run currently selected via the buttons. Each run is contained as a .zip file in the summaries folder. The URL for the PUBLIC_SVN is: https://svn.vsp.tu-berlin.de/repos/public-svn/matsim/scenarios/countries/de/episim

Plot name Short name File name
Activity Levels by Type actLevPerTyp ActivityLevelsPlot
Disease Import disImp DiseaseImport
Hospitalization New Cases (post-process) hosNewCasPos PostHospital
Hospitalization Rate (post-process) hosRatPos PostHospital
Cases Comparison casCom WeeklyInfectionsPlot
Virus Strains virStr MutationsPlot
Simulated R-Values simRVal RValuePlot
Simulated R-Values by Purpose simRValByPur RValueTwo
Infections by Activity Type infByActTyp InfectionsByActivityType
Vaccine Effectiveness (against infection) vacEffAgaInf Vaccination
EffectivenessPlot
Vaccine Effectiveness Vs. Strain vacEffVsStr VaccinationEffectiveness-
VsStrain
Incidence comparison between vaccinated and unvaccinated persons incComVacAndUnvac WeeklyInfection-
ByVaccination
Vaccination Rates and Booster Rates VacRatBooRat VaccinationRates
Vaccination per Type VacPerTyp VaccinationPerType
Antibodies Antibodies Antibodies
Hospitalization New Cases hospNewCas Hospitalization7-
DayNewCasesPlot
Hospitalization Rate Comparison hospRatComp HospitalizationPlot
Hospitalization Rate Comparison for vaccinated and unvaccinated persons hospRatCompVacAndUnvac Hospitalization-
VaccinationComparison
Simulated Health Outcomes Over Time simHealOutOveTim HealthOutcomes
7-Day Incidence by Age Group Over Time (Heatmap) inciHeatmap HeatMap
7-Day Incidence by Age Group Over Time (Linechart) inciLinechart AgeGroupLineChart
Leisure Outdoor Fraction leiOutFra LeisureOutdoorFraction
Weekly Tests weekTest WeeklyTests

# Activity Levels by Type

Activity Levels by Type Plot

Data basis: RunId + '.restrictions.txt.csv'

# Disease Import

Disease Import Plot

Data basis: RunId + '.diseaseImport.tsv'

# Hospitalization New Cases (post-process)

Hospitalization New Cases (post-process) Plot

Data basis: RunId + '.post.hospital.tsv'

# Hospitalization Rate (post-process)

Hospitalization Rate (post-process) Plot

Data basis: RunId + '.post.hospital.tsv'

# Cases Comparison

DisCases Comparisonease Plot

Data basis:

  • Model data: RunId + '.infections.txt.csv'
  • Sewage data: PUBLIC_SVN + 'original-data/Abwasser/CologneSewageDataCleaned.csv'

# Virus Strains

Virus Strains Plot

Data basis:

  • First plot: PUBLIC_SVN + 'original-data/Fallzahlen/' + 'Cologne/VOC_Cologne_RKI.csv' respectively 'Berlin/VOC_Berlin.csv'
  • Second and third plot: RunId + '.strains.tsv'

Add new data:

  • As soon as new variants for Cologne are available, they will be added automatically.
  • For the new variants only the name in the file (opens new window) has to be adjusted (headerCologne[] line 292)
  • In case new variants should not be displayed, the index must be added in the for loop (line 366) in the termination condition.

# Simulated R-Values

Simulated R-Values Plot

Data basis: RunId + '.infections.txt.csv'

# Simulated R-Values by Purpose

Simulated R-Values by Purpose Plot

Data basis: RunId + '.infections.txt.csv'

# Infections by Activity Type

Infections by Activity Type Plot

Data basis: RunId + '.infectionsPerActivity.txt.tsv'

# Incidence comparison between vaccinated and unvaccinated persons

Incidence comparison between vaccinated and unvaccinated persons Plot

Data basis: PUBLIC_SVN + 'original-data/Fallzahlen/RKI/' + e.g. 'cologne-cases.csv'

# Vaccination Rates and Booster Rates

Disease Plot

Data basis: RunId + '.vaccinationsDetailed.tsv'

# Vaccination per Type

Vaccination Rates and Booster Rates Plot

Data basis: RunId + '.vaccinations.tsv'

# Hospitalization New Cases

Hospitalization New Cases Plot

Data basis: RunId + '.infections.txt.csv'

# Hospitalization Rate Comparison

Hospitalization Rate Comparison Plot

Data basis: RunId + '.infections.txt.csv'

# Hospitalization Rate Comparison for vaccinated and unvaccinated persons

Hospitalization Rate Comparison for vaccinated and unvaccinated persons Plot

Data basis: RunId + '.infections.txt.csv'

# Simulated Health Outcomes Over Time

Simulated Health Outcomes Over Time Plot

Data basis: RunId + '.infections.txt.csv'

# 7-Day Incidence by Age Group Over Time (Heatmap)

7-Day Incidence by Age Group Over Time (Heatmap) Plot

Data basis: RunId + '.post.incidenceByAge.tsv'

# 7-Day Incidence by Age Group Over Time (Linechart)

7-Day Incidence by Age Group Over Time (Linechart) Plot

Data basis: RunId + '.post.incidenceByAge.tsv'

# Leisure Outdoor Fraction

Leisure Outdoor Fraction Plot

Data basis: RunId + '.outdoorFraction.tsv'

# Weekly Tests

Weekly Tests Plot

Data basis: RunId + '.infections.txt.csv'

Last Updated: 2/27/2024, 11:35:59 AM

+

# Plots

The results of the runs are shown in the plots below. The following plots are available for visualization. The RunId describes the run currently selected via the buttons. Each run is contained as a .zip file in the summaries folder. The URL for the PUBLIC_SVN is: https://svn.vsp.tu-berlin.de/repos/public-svn/matsim/scenarios/countries/de/episim

Plot name Short name File name
Activity Levels by Type actLevPerTyp ActivityLevelsPlot
Disease Import disImp DiseaseImport
Hospitalization New Cases (post-process) hosNewCasPos PostHospital
Hospitalization Rate (post-process) hosRatPos PostHospital
Cases Comparison casCom WeeklyInfectionsPlot
Virus Strains virStr MutationsPlot
Simulated R-Values simRVal RValuePlot
Simulated R-Values by Purpose simRValByPur RValueTwo
Infections by Activity Type infByActTyp InfectionsByActivityType
Vaccine Effectiveness (against infection) vacEffAgaInf Vaccination
EffectivenessPlot
Vaccine Effectiveness Vs. Strain vacEffVsStr VaccinationEffectiveness-
VsStrain
Incidence comparison between vaccinated and unvaccinated persons incComVacAndUnvac WeeklyInfection-
ByVaccination
Vaccination Rates and Booster Rates VacRatBooRat VaccinationRates
Vaccination per Type VacPerTyp VaccinationPerType
Antibodies Antibodies Antibodies
Hospitalization New Cases hospNewCas Hospitalization7-
DayNewCasesPlot
Hospitalization Rate Comparison hospRatComp HospitalizationPlot
Hospitalization Rate Comparison for vaccinated and unvaccinated persons hospRatCompVacAndUnvac Hospitalization-
VaccinationComparison
Simulated Health Outcomes Over Time simHealOutOveTim HealthOutcomes
7-Day Incidence by Age Group Over Time (Heatmap) inciHeatmap HeatMap
7-Day Incidence by Age Group Over Time (Linechart) inciLinechart AgeGroupLineChart
Leisure Outdoor Fraction leiOutFra LeisureOutdoorFraction
Weekly Tests weekTest WeeklyTests

# Activity Levels by Type

Activity Levels by Type Plot

Data basis: RunId + '.restrictions.txt.csv'

# Disease Import

Disease Import Plot

Data basis: RunId + '.diseaseImport.tsv'

# Hospitalization New Cases (post-process)

Hospitalization New Cases (post-process) Plot

Data basis: RunId + '.post.hospital.tsv'

# Hospitalization Rate (post-process)

Hospitalization Rate (post-process) Plot

Data basis: RunId + '.post.hospital.tsv'

# Cases Comparison

DisCases Comparisonease Plot

Data basis:

  • Model data: RunId + '.infections.txt.csv'
  • Sewage data: PUBLIC_SVN + 'original-data/Abwasser/CologneSewageDataCleaned.csv'

# Virus Strains

Virus Strains Plot

Data basis:

  • First plot: PUBLIC_SVN + 'original-data/Fallzahlen/' + 'Cologne/VOC_Cologne_RKI.csv' respectively 'Berlin/VOC_Berlin.csv'
  • Second and third plot: RunId + '.strains.tsv'

Add new data:

  • As soon as new variants for Cologne are available, they will be added automatically.
  • For the new variants only the name in the file (opens new window) has to be adjusted (headerCologne[] line 292)
  • In case new variants should not be displayed, the index must be added in the for loop (line 366) in the termination condition.

# Simulated R-Values

Simulated R-Values Plot

Data basis: RunId + '.infections.txt.csv'

# Simulated R-Values by Purpose

Simulated R-Values by Purpose Plot

Data basis: RunId + '.infections.txt.csv'

# Infections by Activity Type

Infections by Activity Type Plot

Data basis: RunId + '.infectionsPerActivity.txt.tsv'

# Incidence comparison between vaccinated and unvaccinated persons

Incidence comparison between vaccinated and unvaccinated persons Plot

Data basis: PUBLIC_SVN + 'original-data/Fallzahlen/RKI/' + e.g. 'cologne-cases.csv'

# Vaccination Rates and Booster Rates

Disease Plot

Data basis: RunId + '.vaccinationsDetailed.tsv'

# Vaccination per Type

Vaccination Rates and Booster Rates Plot

Data basis: RunId + '.vaccinations.tsv'

# Hospitalization New Cases

Hospitalization New Cases Plot

Data basis: RunId + '.infections.txt.csv'

# Hospitalization Rate Comparison

Hospitalization Rate Comparison Plot

Data basis: RunId + '.infections.txt.csv'

# Hospitalization Rate Comparison for vaccinated and unvaccinated persons

Hospitalization Rate Comparison for vaccinated and unvaccinated persons Plot

Data basis: RunId + '.infections.txt.csv'

# Simulated Health Outcomes Over Time

Simulated Health Outcomes Over Time Plot

Data basis: RunId + '.infections.txt.csv'

# 7-Day Incidence by Age Group Over Time (Heatmap)

7-Day Incidence by Age Group Over Time (Heatmap) Plot

Data basis: RunId + '.post.incidenceByAge.tsv'

# 7-Day Incidence by Age Group Over Time (Linechart)

7-Day Incidence by Age Group Over Time (Linechart) Plot

Data basis: RunId + '.post.incidenceByAge.tsv'

# Leisure Outdoor Fraction

Leisure Outdoor Fraction Plot

Data basis: RunId + '.outdoorFraction.tsv'

# Weekly Tests

Weekly Tests Plot

Data basis: RunId + '.infections.txt.csv'

Last Updated: 2/27/2024, 12:32:48 PM

←

- + diff --git a/docs/documentation/run-setup.html b/docs/documentation/run-setup.html index d5a89ab7..2a4d56d1 100644 --- a/docs/documentation/run-setup.html +++ b/docs/documentation/run-setup.html @@ -11,8 +11,8 @@ - - + +
COVID-SIM Documentation
- + diff --git a/docs/documentation/website.html b/docs/documentation/website.html index 164e4e07..fbe98032 100644 --- a/docs/documentation/website.html +++ b/docs/documentation/website.html @@ -11,8 +11,8 @@ - - + +
COVID-SIM Documentation
Last Updated: 2/27/2024, 11:35:59 AM

+

  • Connect up your new pages by adding a new folder here, and also adding a new URL to /src/router.ts. Anyone who knows the URL can then see the page. When you are ready for the public to also find it, add a link to /src/components/TopBar.vue and to the homepage.
  • Each run should use a readme.md file under /src/assets so that researchers can add notes without having to learn the build system.
  • /scripts: Python scripts go here, which are used for preprocessing EpiSim results
  • /public: large .zip files, project notes, etc go in public. These files are pushed as-is by webpack; i.e. they are not packaged in any way

    • # Thank you!

    Good luck and thanks for the help! -- Billy (opens new window)

    Last Updated: 2/27/2024, 12:32:48 PM

    ← →

    - + diff --git a/docs/index.html b/docs/index.html index 7bcb0c35..6ee28954 100644 --- a/docs/index.html +++ b/docs/index.html @@ -11,8 +11,8 @@ - - + + - +