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Validator.h
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class Validator
{
private:
string errorMsg;
bool valid;
public:
Validator(): valid(1), errorMsg("") {}
bool isValidHeader(string str)
{
int state = 0;
int len = str.length();
for (int i=0; i<len; i++)
{
if ( !state )
{
if (str[i] != '>')
{
errorMsg = "Expected > at location 0";
return valid = false;
}
state = 1;
}
else if (state == 1)
{
if ( str[i] > 47 && str[i] < 58 || str[i] == '_' )
{
errorMsg = "Name cannot start with number or underscore";
return valid = false;
}
state = 2;
}
else if (state)
{
if ( (str[i] < 65 || str[i] > 90) && (str[i] < 48 || str[i] > 57) && str[i] != '_' )
{
errorMsg = "Invalid character in name";
return valid = false;
}
}
}
if (state == 2) { errorMsg = ""; return valid = true; }
else if (state == 1) { errorMsg = "Sequence name not present"; return valid = false; }
else return valid = false;
}
bool isValidSequence(string& str)
{
int len = str.length();
for (int i=0; i<len; i++)
{
if ( !(str[i] == 'A' || str[i] == 'C' || str[i] == 'G' || str[i] == 'T' || str[i] == 'a' || str[i] == 'c' || str[i] == 'g' || str[i] == 't' ) )
{
errorMsg = "Invalid character in sequence";
return valid = false;
}
}
errorMsg = "";
return valid = true;
}
string getErrorMessage() { return errorMsg; }
bool lastValid() { return valid; }
};