Error in [.data.frame(feature.names, , gene.column) : undefined columns selected

[mscheperr]

When running the commands to load the dataset below into seurat in R I get the following error:
Error in [.data.frame(feature.names, , gene.column) :
undefined columns selected

Has anyone else had this issue and how have you solved it?

Data set used:
Cell Browser dataset ID: pre-postnatal-cortex/all/rna

Script used:
require(Seurat)
setwd("downloadDir")
mat = Read10X(".")
meta = read.table("meta.tsv", header=T, sep="\t", as.is=T, row.names=1)
so <- CreateSeuratObject(counts = mat, project = "myProjectName", meta.data=meta)

[maximilianh]

I pasted you error into a search engine and found this ticket: satijalab/seurat#1388 Does this somehow help solve your problem? If so, I should probably document that and add something to our instructions...

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On Tue, Apr 9, 2024 at 11:17 AM mscheperr ***@***.***> wrote: When running the commands to load the dataset below into seurat in R I get the following error: Error in [.data.frame(feature.names, , gene.column) : undefined columns selected Has anyone else had this issue and how have you solved it? Data set used: Cell Browser dataset ID: pre-postnatal-cortex/all/rna Script used: require(Seurat) setwd("downloadDir") mat = Read10X(".") meta = read.table("meta.tsv", header=T, sep="\t", as.is=T, row.names=1) so <- CreateSeuratObject(counts = mat, project = "myProjectName", meta.data=meta) — Reply to this email directly, view it on GitHub <#266>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AACL4TJXSL5YE47QTBJ5NTTY4QWC7AVCNFSM6AAAAABF7B2MJ6VHI2DSMVQWIX3LMV43ASLTON2WKOZSGIZTIMBWGU4DOMQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>