diff --git a/day01.html b/day01.html index 6990e2a..f57767d 100644 --- a/day01.html +++ b/day01.html @@ -398,7 +398,7 @@
… and many others exist.
DESeq2 Workflow for the ‘median of ratios’:
-Task (5 min): Plot a heatmap of the first 10 genes (rows) of the counts matrix and add the metadata after DESeq was run as @@ -1123,10 +1122,10 @@
Model fit and testing
+ arrange(-abs(log2FoldChange)) %>% head(20)dds_res %>% data.frame() %>% subset(padj < 0.05) %>% - arrange(abs(log2FoldChange), descending=TRUE) %>% head(20)
diff --git a/day03.html b/day03.html index 30aa6c0..f544ecd 100644 --- a/day03.html +++ b/day03.html @@ -398,7 +398,7 @@DESeq2 Analysis with R: Part 03
Bioinfo-Core @ MPI-IE
-Tue May 14 22:37:27 2024
+Tue May 14 23:57:39 2024
diff --git a/day04.html b/day04.html index e209738..9583185 100644 --- a/day04.html +++ b/day04.html @@ -398,7 +398,7 @@deseq2 - applied
Bioinfo-Core @ MPI-IE
-Tue May 14 22:40:02 2024
+Wed May 15 00:00:13 2024
diff --git a/images/DESeq2_sizefactor.jpeg b/images/DESeq2_sizefactor.jpeg new file mode 100644 index 0000000..ef59a3d Binary files /dev/null and b/images/DESeq2_sizefactor.jpeg differ diff --git a/images/Wald_LRT.jpeg b/images/Wald_LRT.jpeg index 1bc1763..beb4621 100644 Binary files a/images/Wald_LRT.jpeg and b/images/Wald_LRT.jpeg differ diff --git a/index.html b/index.html index cb19cbc..dc08234 100644 --- a/index.html +++ b/index.html @@ -398,7 +398,7 @@DESeq2 Analysis with R: Description
Bioinfo-Core @ MPI-IE
-Tue May 14 22:40:26 2024
+Wed May 15 00:00:37 2024
diff --git a/outline.html b/outline.html index a956488..105bc01 100644 --- a/outline.html +++ b/outline.html @@ -398,7 +398,7 @@DESeq2 Analysis with R: outline
Bioinfo-Core @ MPI-IE
-Tue May 14 22:40:26 2024
+Wed May 15 00:00:37 2024
diff --git a/summary.html b/summary.html index c51ebe4..09af397 100644 --- a/summary.html +++ b/summary.html @@ -398,7 +398,7 @@DESeq2 Analysis with R: outline
Bioinfo-Core @ MPI-IE
-Tue May 14 22:40:27 2024
+Wed May 15 00:00:37 2024