From da4611a47cb857621ad59b4e1f10263f5e1f1739 Mon Sep 17 00:00:00 2001
From: Kyle McChesney <mbio.kyle@gmail.com>
Date: Tue, 26 Mar 2024 15:41:04 -0600
Subject: [PATCH 1/3] Move dev push to on push tag (cannot reupload), add rest
 of prod push, github release, signed, etc

---
 .bumpversion.cfg               |  2 +-
 .github/workflows/merge.yaml   | 25 ----------
 .github/workflows/release.yaml | 84 ++++++++++++++++++++++++++++++++++
 3 files changed, 85 insertions(+), 26 deletions(-)
 create mode 100644 .github/workflows/release.yaml

diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index cb4a0ce..15206de 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,7 +1,7 @@
 [bumpversion]
 current_version = 0.0.1
 commit = True
-tag = True
+tag = False
 
 [bumpversion:file:setup.py]
 
diff --git a/.github/workflows/merge.yaml b/.github/workflows/merge.yaml
index dab5180..005fc2b 100644
--- a/.github/workflows/merge.yaml
+++ b/.github/workflows/merge.yaml
@@ -18,28 +18,3 @@ jobs:
   build:
     needs: [test, lint, docs]
     uses: ./.github/workflows/build.yaml
-
-  test-release:
-    name: publish to test pypi
-    needs: build
-    runs-on: ubuntu-latest
-    if: ${{ github.repository == 'mammothbio-os/palamedes' }}
-
-    environment:
-      name: test-release
-      url: https://test.pypi.org/p/palamedes
-
-    permissions:
-      id-token: write
-
-    steps:
-    - name: download build
-      uses: actions/download-artifact@v3
-      with:
-        name: python-package-distributions
-        path: dist/
-
-    - name: publish
-      uses: pypa/gh-action-pypi-publish@release/v1
-      with:
-        repository-url: https://test.pypi.org/legacy/
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
new file mode 100644
index 0000000..958c4a0
--- /dev/null
+++ b/.github/workflows/release.yaml
@@ -0,0 +1,84 @@
+name: release
+
+on:
+  push:
+    tags:
+      - "*"
+
+jobs:
+  build:
+    if: ${{ github.repository == 'mammothbio-os/palamedes' }}
+    uses: ./.github/workflows/build.yaml
+
+  test-release:
+    name: publish to test pypi
+    needs: build
+    runs-on: ubuntu-latest
+
+    environment:
+      name: test-release
+      url: https://test.pypi.org/p/palamedes
+
+    permissions:
+      id-token: write
+
+    steps:
+    - name: download build
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+    - name: publish
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        repository-url: https://test.pypi.org/legacy/
+
+  release:
+    needs: test-release
+    environment: release
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write
+
+    steps:
+    - name: download build
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+    - name: publish
+      uses: pypa/gh-action-pypi-publish@release/v1
+
+  release-github:
+    needs: release
+    runs-on: ubuntu-latest
+
+    permissions:
+      contents: write
+      id-token: write
+
+    steps:
+    - name: download build
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+    - name: sign
+      uses: sigstore/gh-action-sigstore-python@v1.2.3
+      with:
+        inputs: >-
+          ./dist/*.tar.gz
+          ./dist/*.whl
+
+    - name: create release
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+      run: gh release create '${{ github.ref_name }}' --repo '${{ github.repository }}' --notes ""
+
+    - name: upload release artifacts
+      env:
+        GITHUB_TOKEN: ${{ github.token }}
+      run: gh release upload '${{ github.ref_name }}' dist/** --repo '${{ github.repository }}'

From cd1a998b6f2d3f37204e9e0b0704e1d898dbe5a4 Mon Sep 17 00:00:00 2001
From: Kyle McChesney <mbio.kyle@gmail.com>
Date: Tue, 26 Mar 2024 15:41:17 -0600
Subject: [PATCH 2/3] =?UTF-8?q?Bump=20version:=200.0.1=20=E2=86=92=200.0.2?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .bumpversion.cfg      | 2 +-
 palamedes/__init__.py | 2 +-
 setup.py              | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.bumpversion.cfg b/.bumpversion.cfg
index 15206de..22dd0fe 100644
--- a/.bumpversion.cfg
+++ b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.1
+current_version = 0.0.2
 commit = True
 tag = False
 
diff --git a/palamedes/__init__.py b/palamedes/__init__.py
index 4d83ebd..f727090 100644
--- a/palamedes/__init__.py
+++ b/palamedes/__init__.py
@@ -8,7 +8,7 @@
 from palamedes.hgvs.builders import BUILDER_CONFIG
 
 
-__version__ = "0.0.1"
+__version__ = "0.0.2"
 
 
 def generate_hgvs_variants(
diff --git a/setup.py b/setup.py
index 3142720..d8ae14a 100644
--- a/setup.py
+++ b/setup.py
@@ -1,6 +1,6 @@
 from setuptools import find_packages, setup
 
-version = "0.0.1"
+version = "0.0.2"
 
 setup(
     name="palamedes",

From e6770e1d64cb395afdbc01b688d8b817fb9f7ad0 Mon Sep 17 00:00:00 2001
From: Kyle McChesney <mbio.kyle@gmail.com>
Date: Tue, 26 Mar 2024 15:43:10 -0600
Subject: [PATCH 3/3] non deprecated bump tool

---
 requirements_dev.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements_dev.txt b/requirements_dev.txt
index e2163b3..3156e18 100644
--- a/requirements_dev.txt
+++ b/requirements_dev.txt
@@ -5,6 +5,6 @@ pytest-cov~=2.11.1
 pytest~=6.2.1
 ipdb~=0.13.4
 sphinx~=7.2.6
-bumpversion~=0.6.0
 sphinx-rtd-theme~=2.0.0
 myst-parser~=2.0.0
+bump-my-version~=0.19.3