From 3d39719a3ea086f4451fd315a22d691717382b09 Mon Sep 17 00:00:00 2001
From: Sue Bello <drsbello@gmail.com>
Date: Fri, 30 Aug 2024 16:19:23 -0400
Subject: [PATCH] working on #4024

updated synonym type for
impaired glucose tolerance
accessory spleen
small penis
---
 src/ontology/mp-edit.owl | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl
index 9027938a..631b734d 100644
--- a/src/ontology/mp-edit.owl
+++ b/src/ontology/mp-edit.owl
@@ -43599,8 +43599,8 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0003053> <http://purl.obolibrary.o
 # Class: <http://purl.obolibrary.org/obo/MP_0003054> (spina bifida)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "MESH:C10.500.680.800") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0003054> "common congenital midline defect of fusion of the vertebral arch")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/MP_0003054> "spinal dysraphism")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/MP_0003054> "Fyler:4157")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0003054> "spinal dysraphism")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0003054> "MPheno.ontology")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0003054> "MP:0003054")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/MP_0003054> <http://purl.obolibrary.org/obo/mp-edit#CvDC_Terms>)
@@ -46564,8 +46564,8 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0003341> <http://purl.obolibrary.o
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN:0-683-40008-8") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "NCBI:matt") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0003342> "the splenic tissue is divided into equal masses; often related to situs inversus")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/MP_0003342> "Fyler:4772")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0003342> "polysplenia")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0003342> "MPheno.ontology")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/MP_0003342> "polysplenia")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0003342> "MP:0003342")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/MP_0003342> <http://purl.obolibrary.org/obo/mp-edit#CvDC_Terms>)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0003342> "accessory spleen")
@@ -65878,7 +65878,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0005187> <http://purl.obolibrary.o
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN:0-683-40008-8") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0005188> "reduced size of the organ of copulation and urination in the male")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005188> "decreased penis size")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005188> "micropenis")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005188> "microphallus")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> <http://purl.obolibrary.org/obo/MP_0005188> "microphallus")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0005188> "MPheno.ontology")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0005188> "MP:0005188")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0005188> "small penis")
@@ -66853,7 +66853,6 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0005286> <http://purl.obolibrary.o
 # Class: <http://purl.obolibrary.org/obo/MP_0005287> (narrow eye opening)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "MGI:cwg") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0005287> "less than the normal distance from one eyelid to the other without fusion of the eyelid margins")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "blepharophimosis")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "blepharostenosis")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "closer eyelid folds")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "closer roots of eyelids")
@@ -66861,6 +66860,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "reduced palpebral fissure size")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "slit eyes")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "small eyelid aperture")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://eyewiki.org/Blepharophimosis_Syndrome>) <http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> <http://purl.obolibrary.org/obo/MP_0005287> "blepharophimosis")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0005287> "MPheno.ontology")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0005287> "MP:0005287")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/MP_0005287> <http://purl.obolibrary.org/obo/mp-edit#IMPC>)
@@ -66925,7 +66925,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0005292> <http://purl.obolibrary.o
 # Class: <http://purl.obolibrary.org/obo/MP_0005293> (impaired glucose tolerance)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "MESH:C18.452.394.952.500") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0005293> "less than the normal response to oral consumption or intravenous injection of specified amounts of glucose and indicative of insulin resistance; measured by determining whole blood or plasma sugar level in a fasting state before and after taking glucose at specified intervals")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005293> "glucose intolerance")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym> <http://purl.obolibrary.org/obo/MP_0005293> "glucose intolerance")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005293> "poor glucose tolerance")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005293> "reduced glucose tolerance")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0005293> "MPheno.ontology")
@@ -67260,7 +67260,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/MP_0005323> <http://purl.obolibrary.o
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://www.asbestos.com/mesothelioma/peritoneal-effusion/>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7152461/>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN:0-683-40008-8") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MP_0005324> "accumulation or retention of fluid within the peritoneal cavity")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005324> "abdominal effusion")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005324> "peritoneal effusion")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://mesothelioma.net/peritoneal-effusion-ascites/>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0005324> "peritoneal effusion")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/MP_0005324> "MPheno.ontology")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0005324> "MP:0005324")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0005324> "ascites")