From 63c261224863d9f56fab0e765cc3e7ab4dd82f38 Mon Sep 17 00:00:00 2001 From: "Anna V. Anagnostopoulos" Date: Wed, 13 Dec 2023 07:27:38 -0500 Subject: [PATCH] Closes #3859 --- src/ontology/mp-edit.owl | 72 +++++++++++++++++++++++++++++++--------- 1 file changed, 57 insertions(+), 15 deletions(-) diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl index 8b53fd30..87ffbc2c 100644 --- a/src/ontology/mp-edit.owl +++ b/src/ontology/mp-edit.owl @@ -14387,6 +14387,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -38799,11 +38802,11 @@ SubClassOf( (abnormal tricuspid valve morphology) AnnotationAssertion(Annotation( "ISBN:0-683-40008-8") Annotation( "MESH:A07.541.510.893") "any structural anomaly of the valve that is located between the right atrium and the right ventricle of the heart, and contains three cusps, the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp), attached to the outer fibrous ring (annulus)") +AnnotationAssertion( "abnormal right AV valve morphology") +AnnotationAssertion(Annotation( "UBERON:0002134") Annotation( "https://orcid.org/0000-0002-6490-7723") "abnormal right atrioventricular valve morphology") AnnotationAssertion( "abnormal tricuspid valvar morphology") AnnotationAssertion( "tricuspid valvar dysplasia") AnnotationAssertion( "tricuspid valve dysplasia") -AnnotationAssertion( "abnormal right AV valve morphology") -AnnotationAssertion(Annotation( "UBERON:0002134") Annotation( "https://orcid.org/0000-0002-6490-7723") "abnormal right atrioventricular valve morphology") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0002624") AnnotationAssertion( ) @@ -71731,9 +71734,9 @@ SubClassOf( (tricuspid valve stenosis) AnnotationAssertion(Annotation( "MGI:smb") Annotation( "NCBI:matt") "abnormal narrowing of the tricuspid valve") -AnnotationAssertion( "tricuspid stenosis") AnnotationAssertion( "right AV valve stenosis") AnnotationAssertion( "right atrioventricular valve stenosis") +AnnotationAssertion( "tricuspid stenosis") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0006124") AnnotationAssertion( ) @@ -84081,9 +84084,9 @@ SubClassOf( "MGI:csmith") "increased size of the left upper chamber of the heart") AnnotationAssertion( "Fyler:3011") +AnnotationAssertion( "enlarged heart left atrium") AnnotationAssertion( "enlarged left atrium") AnnotationAssertion( "giant left atrium") -AnnotationAssertion( "enlarged heart left atrium") AnnotationAssertion( "increased cardiac left atrium size") AnnotationAssertion( "increased heart LA size") AnnotationAssertion( "increased heart left atrial size") @@ -84098,9 +84101,9 @@ SubClassOf( "MGI:csmith") "increased size of the right upper chamber of the heart") AnnotationAssertion( "Fyler:1771") +AnnotationAssertion( "enlarged heart right atrium") AnnotationAssertion( "enlarged right atrium") AnnotationAssertion( "giant right atrium") -AnnotationAssertion( "enlarged heart right atrium") AnnotationAssertion( "increased cardiac right atrium size") AnnotationAssertion( "increased heart RA size") AnnotationAssertion( "increased heart right atrial size") @@ -107549,9 +107552,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "csmith") AnnotationAssertion( "2010-10-06T03:50:28Z") -AnnotationAssertion( "abnormal tricuspid valve anulus morphology") AnnotationAssertion( "abnormal right AV valve annulus morphology") AnnotationAssertion( "abnormal right atrioventricular valve annulus morphology") +AnnotationAssertion( "abnormal tricuspid valve anulus morphology") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0010621") AnnotationAssertion(rdfs:label "abnormal tricuspid valve annulus morphology") @@ -107563,11 +107566,11 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "csmith") AnnotationAssertion( "2010-10-06T03:50:28Z") -AnnotationAssertion( "abnormal tricuspid valve leaflet morphology") AnnotationAssertion( "abnormal right AV valve cusp morphology") AnnotationAssertion( "abnormal right AV valve leaflet morphology") AnnotationAssertion( "abnormal right atrioventricular valve cusp morphology") AnnotationAssertion( "abnormal right atrioventricular valve leaflet morphology") +AnnotationAssertion( "abnormal tricuspid valve leaflet morphology") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0010622") AnnotationAssertion(rdfs:label "abnormal tricuspid valve cusp morphology") @@ -107606,11 +107609,11 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "csmith") AnnotationAssertion( "2010-10-06T03:50:28Z") -AnnotationAssertion( "absent tricuspid valve leaflets") AnnotationAssertion( "absent right AV valve cusps") AnnotationAssertion( "absent right AV valve leaflets") AnnotationAssertion( "absent right atrioventricular valve cusps") AnnotationAssertion( "absent right atrioventricular valve leaflets") +AnnotationAssertion( "absent tricuspid valve leaflets") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0010625") AnnotationAssertion(rdfs:label "absent tricuspid valve cusps") @@ -107623,13 +107626,13 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "csmith") AnnotationAssertion( "2010-10-06T03:50:28Z") -AnnotationAssertion( "thick tricuspid valve leaflets") -AnnotationAssertion( "thickened tricuspid valve cusps") -AnnotationAssertion( "thickened tricuspid valve leaflets") AnnotationAssertion( "thick right AV valve cusps") AnnotationAssertion( "thick right AV valve leaflets") AnnotationAssertion( "thick right atrioventricular valve cusps") AnnotationAssertion( "thick right atrioventricular valve leaflets") +AnnotationAssertion( "thick tricuspid valve leaflets") +AnnotationAssertion( "thickened tricuspid valve cusps") +AnnotationAssertion( "thickened tricuspid valve leaflets") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0010626") AnnotationAssertion(rdfs:label "thick tricuspid valve cusps") @@ -107644,11 +107647,11 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "csmith") AnnotationAssertion( "2010-10-06T03:50:28Z") -AnnotationAssertion( "increased tricuspid valve size") AnnotationAssertion( "enlarged right AV valve") AnnotationAssertion( "enlarged right atrioventricular valve") AnnotationAssertion( "increased right AV valve size") AnnotationAssertion( "increased right atrioventricular valve size") +AnnotationAssertion( "increased tricuspid valve size") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0010627") AnnotationAssertion(rdfs:label "enlarged tricuspid valve") @@ -107661,9 +107664,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "csmith") AnnotationAssertion( "2010-10-06T03:50:28Z") -AnnotationAssertion( "open tricuspid valve") AnnotationAssertion( "open right AV valve") AnnotationAssertion( "open right atrioventricular valve") +AnnotationAssertion( "open tricuspid valve") AnnotationAssertion( "patent right AV valve") AnnotationAssertion( "patent right atrioventricular valve") AnnotationAssertion( "MPheno.ontology") @@ -107678,9 +107681,9 @@ AnnotationAssertion(Annotation( ) AnnotationAssertion( "csmith") AnnotationAssertion( "2010-10-06T03:50:28Z") -AnnotationAssertion( "thickened tricuspid valve") AnnotationAssertion( "thick right AV valve") AnnotationAssertion( "thick right atrioventricular valve") +AnnotationAssertion( "thickened tricuspid valve") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0010629") AnnotationAssertion(rdfs:label "thick tricuspid valve") @@ -122781,9 +122784,9 @@ AnnotationAssertion( "csmith") AnnotationAssertion( "2012-04-27T09:13:56Z") AnnotationAssertion( "Fyler:1720") -AnnotationAssertion( "hypoplastic tricuspid valve") AnnotationAssertion( "hypoplastic right AV valve") AnnotationAssertion( "hypoplastic right atrioventricular valve") +AnnotationAssertion( "hypoplastic tricuspid valve") AnnotationAssertion( "right AV valve hypoplasia") AnnotationAssertion( "right atrioventricular valve hypoplasia") AnnotationAssertion( "MPheno.ontology") @@ -186097,6 +186100,45 @@ EquivalentClasses( ObjectSomeValuesFr SubClassOf( ) SubClassOf( ) +# Class: (abnormal heart atrium wall thickness) + +AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6490-7723") "anomaly in the depth of the cardiac wall of the heart atria") +AnnotationAssertion( "2023-12-13T12:00:26Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( "abnormal atrial wall thickness") +AnnotationAssertion( "abnormal heart atrial wall thickness") +AnnotationAssertion( "MPheno.ontology") +AnnotationAssertion( "MP:0031535") +AnnotationAssertion(rdfs:label "abnormal heart atrium wall thickness") +SubClassOf( ) + +# Class: (decreased heart atrium wall thickness) + +AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6490-7723") "decreased depth of the cardiac wall of the heart atria") +AnnotationAssertion( "2023-12-13T12:17:02Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( "decreased atrial wall thickness") +AnnotationAssertion( "reduced atrial wall thickness") +AnnotationAssertion( "reduced heart atrium wall thickness") +AnnotationAssertion( "thin atrial wall") +AnnotationAssertion( "MPheno.ontology") +AnnotationAssertion( "MP:0031536") +AnnotationAssertion(rdfs:label "decreased heart atrium wall thickness") +SubClassOf( ) + +# Class: (increased heart atrium wall thickness) + +AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6490-7723") "increased depth of the cardiac wall of the heart atria") +AnnotationAssertion( "2023-12-13T12:20:59Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( "increased atrial wall thickness") +AnnotationAssertion( "increased heart atrial wall thickness") +AnnotationAssertion( "thick atrial wall") +AnnotationAssertion( "MPheno.ontology") +AnnotationAssertion( "MP:0031537") +AnnotationAssertion(rdfs:label "increased heart atrium wall thickness") +SubClassOf( ) + # Class: (abnormal gastrula morphology) AnnotationAssertion(Annotation( "http://discovery.lifemapsc.com/library/review-of-medical-embryology/chapter-18-week-3-of-development-trilaminar-germ-disk-embryo-formation-and-gastrulation") "any structural anomaly of the pear shaped trilaminar embryonic stage in which the primititve streak elongates, the epiblast cells migrate medially towards the streak, enter the primitive groove and migrate laterally to organize into the intraembryonic mesoderm (epithelio-mesenchymal transition) between the embryonic ectoderm and primitive endoderm; the notochordal process forms and extends, and the disc becomes pear shaped as the notochordal process grows")