diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl index e44133fe..bb897610 100644 --- a/src/ontology/mp-edit.owl +++ b/src/ontology/mp-edit.owl @@ -11837,6 +11837,9 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -100003,6 +100006,7 @@ AnnotationAssertion( "increased creatine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased creatine level) @@ -100021,6 +100025,7 @@ AnnotationAssertion( "decreased creatine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal circulating creatine level) @@ -136063,6 +136068,7 @@ AnnotationAssertion( "decreased glutathione level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased kidney glutathione level) @@ -136091,6 +136097,7 @@ AnnotationAssertion( "increased glutathione level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (increased kidney glutathione level) @@ -154546,6 +154553,40 @@ AnnotationAssertion( "enhanced pulmonary alveolar fluid clearance") SubClassOf( ) +# Class: (increased amino acid level) + +AnnotationAssertion(Annotation( ) "increase in the amount of a carboxylic acid containing one or more amino groups (-NH2) and a carboxyl (-COOH) group") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-07T20:53:12Z"^^xsd:dateTime) +AnnotationAssertion( "elevated amino acid level") +AnnotationAssertion( "MP:0014527") +AnnotationAssertion(rdfs:label "increased amino acid level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) + +# Class: (decreased amino acid level) + +AnnotationAssertion(Annotation( ) "reduction in the amount of a carboxylic acid containing one or more amino groups (-NH2) and a carboxyl (-COOH) group") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-07T20:53:25Z"^^xsd:dateTime) +AnnotationAssertion( "reduced amino acid level") +AnnotationAssertion( "MP:0014528") +AnnotationAssertion(rdfs:label "decreased amino acid level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) + +# Class: (decreased beta-alanine level) + +AnnotationAssertion(Annotation( "GO:0019482") "reduction in the amount of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine; it occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-07T20:58:20Z"^^xsd:dateTime) +AnnotationAssertion( "reduced beta-alanine level") +AnnotationAssertion( "MP:0014529") +AnnotationAssertion(rdfs:label "decreased beta-alanine level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) + # Class: (abnormal response to antigen) AnnotationAssertion(Annotation( ) "anomaly in the immune response after exposure to an antigen") @@ -157323,6 +157364,7 @@ AnnotationAssertion(Annotation( "MP:0020237") AnnotationAssertion(rdfs:label "increased proline level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased proline level) @@ -157332,6 +157374,7 @@ AnnotationAssertion( "MP:0020238") AnnotationAssertion(rdfs:label "decreased proline level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal skeletal muscle cell apoptosis) @@ -176799,6 +176842,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030622") AnnotationAssertion(rdfs:label "increased cysteine level") +SubClassOf( ) SubClassOf( ) # Class: (decreased cysteine level) @@ -176810,6 +176854,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030623") AnnotationAssertion(rdfs:label "decreased cysteine level") +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating cysteine level) @@ -176951,6 +176996,7 @@ AnnotationAssertion( "MP:0030635") AnnotationAssertion(rdfs:label "increased taurine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased taurine level) @@ -176963,6 +177009,7 @@ AnnotationAssertion( "MP:0030636") AnnotationAssertion(rdfs:label "decreased taurine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating taurine level) @@ -177023,6 +177070,7 @@ AnnotationAssertion( "MP:0030641") AnnotationAssertion(rdfs:label "increased methionine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased methionine level) @@ -177035,6 +177083,7 @@ AnnotationAssertion( "MP:0030642") AnnotationAssertion(rdfs:label "decreased methionine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating methionine level) @@ -177106,6 +177155,7 @@ AnnotationAssertion( "MP:0030647") AnnotationAssertion(rdfs:label "increased ornithine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased ornithine level) @@ -177118,6 +177168,7 @@ AnnotationAssertion( "MP:0030648") AnnotationAssertion(rdfs:label "decreased ornithine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating ornithine level) @@ -177274,6 +177325,7 @@ AnnotationAssertion( "MP:0030658") AnnotationAssertion(rdfs:label "increased glycine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased glycine level) @@ -177286,6 +177338,7 @@ AnnotationAssertion( "MP:0030659") AnnotationAssertion(rdfs:label "decreased glycine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating arginine level) @@ -177357,6 +177410,7 @@ AnnotationAssertion( "MP:0030664") AnnotationAssertion(rdfs:label "increased arginine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased arginine level) @@ -177369,6 +177423,7 @@ AnnotationAssertion( "MP:0030665") AnnotationAssertion(rdfs:label "decreased arginine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating proline level) @@ -177563,6 +177618,7 @@ AnnotationAssertion( "MP:0030678") AnnotationAssertion(rdfs:label "increased hydroxyproline level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased hydroxyproline level) @@ -177575,6 +177631,7 @@ AnnotationAssertion( "MP:0030679") AnnotationAssertion(rdfs:label "decreased hydroxyproline level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating hydroxyproline level) @@ -177641,6 +177698,7 @@ AnnotationAssertion( "MP:0030684") AnnotationAssertion(rdfs:label "increased cystathionine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased cystathionine level) @@ -177653,6 +177711,7 @@ AnnotationAssertion( "MP:0030685") AnnotationAssertion(rdfs:label "decreased cystathionine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating cystathionine level) @@ -177738,6 +177797,7 @@ AnnotationAssertion( "MP:0030691") AnnotationAssertion(rdfs:label "increased serine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased serine level) @@ -177750,6 +177810,7 @@ AnnotationAssertion( "MP:0030692") AnnotationAssertion(rdfs:label "decreased serine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating serine level) @@ -177819,6 +177880,7 @@ AnnotationAssertion( "MP:0030697") AnnotationAssertion(rdfs:label "increased phenylalanine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased phenylalanine level) @@ -177831,6 +177893,7 @@ AnnotationAssertion( "MP:0030698") AnnotationAssertion(rdfs:label "decreased phenylalanine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal threonine level) @@ -177853,6 +177916,7 @@ AnnotationAssertion( "MP:0030700") AnnotationAssertion(rdfs:label "increased threonine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased threonine level) @@ -177865,6 +177929,7 @@ AnnotationAssertion( "MP:0030701") AnnotationAssertion(rdfs:label "decreased threonine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating threonine level) @@ -177932,6 +177997,7 @@ AnnotationAssertion( "MP:0030706") AnnotationAssertion(rdfs:label "increased glutamine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased glutamine level) @@ -177944,6 +178010,7 @@ AnnotationAssertion( "MP:0030707") AnnotationAssertion(rdfs:label "decreased glutamine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating glutamine level) @@ -178013,6 +178080,7 @@ AnnotationAssertion( "MP:0030712") AnnotationAssertion(rdfs:label "increased isoleucine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased isoleucine level) @@ -178025,6 +178093,7 @@ AnnotationAssertion( "MP:0030713") AnnotationAssertion(rdfs:label "decreased isoleucine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating isoleucine level) @@ -178143,6 +178212,7 @@ AnnotationAssertion( "MP:0030721") AnnotationAssertion(rdfs:label "increased lysine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased lysine level) @@ -178155,6 +178225,7 @@ AnnotationAssertion( "MP:0030722") AnnotationAssertion(rdfs:label "decreased lysine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal valine level) @@ -178177,6 +178248,7 @@ AnnotationAssertion( "MP:0030724") AnnotationAssertion(rdfs:label "increased valine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased valine level) @@ -178189,6 +178261,7 @@ AnnotationAssertion( "MP:0030725") AnnotationAssertion(rdfs:label "decreased valine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating valine level) @@ -178260,6 +178333,7 @@ AnnotationAssertion( "MP:0030730") AnnotationAssertion(rdfs:label "increased beta-alanine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal gamma-aminobutyric acid level) @@ -178288,6 +178362,7 @@ AnnotationAssertion( "MP:0030732") AnnotationAssertion(rdfs:label "increased gamma-aminobutyric acid level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased gamma-aminobutyric acid level) @@ -178344,6 +178419,7 @@ AnnotationAssertion( "MP:0030736") AnnotationAssertion(rdfs:label "increased glutamic acid level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased glutamic acid level) @@ -178358,6 +178434,7 @@ AnnotationAssertion( "MP:0030737") AnnotationAssertion(rdfs:label "decreased glutamic acid level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating glutamic acid level) @@ -178429,6 +178506,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030742") AnnotationAssertion(rdfs:label "increased aspartic acid level") +SubClassOf( ) SubClassOf( ) # Class: (decreased aspartic acid level) @@ -178442,6 +178520,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030743") AnnotationAssertion(rdfs:label "decreased aspartic acid level") +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating homocitrulline level) @@ -178488,6 +178567,7 @@ AnnotationAssertion( "MP:0030747") AnnotationAssertion(rdfs:label "increased leucine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased leucine level) @@ -178500,6 +178580,7 @@ AnnotationAssertion( "MP:0030748") AnnotationAssertion(rdfs:label "decreased leucine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating leucine level) @@ -190620,6 +190701,7 @@ AnnotationAssertion( "MP:0031639") AnnotationAssertion(rdfs:label "decreased alanine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (increased alanine level) @@ -190634,6 +190716,7 @@ AnnotationAssertion( "MP:0031640") AnnotationAssertion(rdfs:label "increased alanine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (alaninuria)