From 1586a859ce84ab672e36f4104ad4770b4f0f8dfa Mon Sep 17 00:00:00 2001
From: Sue Bello <drsbello@gmail.com>
Date: Thu, 24 Oct 2024 14:51:21 -0400
Subject: [PATCH 1/2] adding eqs for #4034

added PR terms and eqs
---
 src/ontology/mp-edit.owl | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl
index 531caf80..cd73ccdb 100644
--- a/src/ontology/mp-edit.owl
+++ b/src/ontology/mp-edit.owl
@@ -14774,6 +14774,8 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001469>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002169>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002170>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002171>))
+Declaration(Class(<http://purl.obolibrary.org/obo/PR_000013526>))
+Declaration(Class(<http://purl.obolibrary.org/obo/PR_000013896>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000014543>))
 Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0003686>))
 Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0005973>))
@@ -155171,6 +155173,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014564> "abnormal circulating SCT concentration")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014564> "MP:0014564")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014564> "abnormal circulating secretin level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014564> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000014543> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014564> <http://purl.obolibrary.org/obo/MP_0005418>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014565> (increased circulating secretin level)
@@ -155182,6 +155185,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014565> "increased blood SCT amount")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014565> "MP:0014565")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014565> "increased circulating secretin level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014565> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000014543> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014565> <http://purl.obolibrary.org/obo/MP_0014564>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014566> (decreased circulating secretin level)
@@ -155193,6 +155197,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014566> "reduced secretin blood concentration")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014566> "MP:0014566")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014566> "decreased circulating secretin level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014566> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000014543> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014566> <http://purl.obolibrary.org/obo/MP_0014564>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014567> (increased circulating pancreatic peptide level)
@@ -155226,6 +155231,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014569> "abnormal circulating PYY concentration")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014569> "MP:0014569")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014569> "abnormal circulating peptide YY level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014569> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013526> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014569> <http://purl.obolibrary.org/obo/MP_0005418>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014570> (increased circulating peptide YY level)
@@ -155237,6 +155243,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014570> "increased circulating PYY concentration")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014570> "MP:0014570")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014570> "increased circulating peptide YY level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014570> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013526> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014570> <http://purl.obolibrary.org/obo/MP_0014569>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014571> (decreased circulating peptide YY level)
@@ -155249,6 +155256,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014571> "reduced blood PYY amount")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014571> "MP:0014571")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014571> "decreased circulating peptide YY level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014571> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013526> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014571> <http://purl.obolibrary.org/obo/MP_0014569>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014572> (abnormal circulating resistin level)
@@ -155260,6 +155268,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014572> "abnormal circulating RETN concentration")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014572> "MP:0014572")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014572> "abnormal circulating resistin level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014572> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014572> <http://purl.obolibrary.org/obo/MP_0005418>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014573> (increased circulating resistin level)
@@ -155271,6 +155280,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014573> "increased circulating RETN concentration")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014573> "MP:0014573")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014573> "increased circulating resistin level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014573> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014573> <http://purl.obolibrary.org/obo/MP_0014572>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014574> (decreased circulating resistin level)
@@ -155282,6 +155292,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014574> "reduced blood resistin amount")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014574> "MP:0014574")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014574> "decreased circulating resistin level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014574> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014574> <http://purl.obolibrary.org/obo/MP_0014572>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014575> (increased intestinal transit time)

From f63335da293ebc8c43d5b87295bf06213c39a0f4 Mon Sep 17 00:00:00 2001
From: Sue Bello <drsbello@gmail.com>
Date: Thu, 24 Oct 2024 15:31:08 -0400
Subject: [PATCH 2/2] fixed eq #4034

---
 src/ontology/mp-edit.owl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl
index cd73ccdb..1e559cc4 100644
--- a/src/ontology/mp-edit.owl
+++ b/src/ontology/mp-edit.owl
@@ -155280,7 +155280,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MP_0014573> "increased circulating RETN concentration")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/MP_0014573> "MP:0014573")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MP_0014573> "increased circulating resistin level")
-EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014573> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
+EquivalentClasses(<http://purl.obolibrary.org/obo/MP_0014573> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000013896> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/MP_0014573> <http://purl.obolibrary.org/obo/MP_0014572>)
 
 # Class: <http://purl.obolibrary.org/obo/MP_0014574> (decreased circulating resistin level)