From d814566e2e8c922e84d780f3716aa289f7f0d122 Mon Sep 17 00:00:00 2001 From: Sue Bello Date: Fri, 2 Feb 2024 16:54:56 -0500 Subject: [PATCH] closes #3902 working on #3897 added synonyms and new terms --- src/ontology/mp-edit.owl | 52 ++++++++++++++++++++++++++++++++++++++-- 1 file changed, 50 insertions(+), 2 deletions(-) diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl index 3120d690..bf7e8f48 100644 --- a/src/ontology/mp-edit.owl +++ b/src/ontology/mp-edit.owl @@ -11658,6 +11658,10 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -25872,6 +25876,8 @@ SubClassOf( (scaly skin) AnnotationAssertion(Annotation( "PMID:8941642") "loss of the outer layer of the epidermis in thick, dry scale-like patches") +AnnotationAssertion( "skin scales") +AnnotationAssertion( "skin scaling") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0001192") AnnotationAssertion( ) @@ -26047,6 +26053,7 @@ SubClassOf( (skin lesions) AnnotationAssertion(Annotation( "MGI:csmith") "focal pathological and/or inflammatory changes characterized by alteration in the size, shape and organization of the cellular components of the skin") +AnnotationAssertion( "cutaneous lesions") AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0001212") AnnotationAssertion(rdfs:label "skin lesions") @@ -29539,7 +29546,7 @@ AnnotationAssertion( "MP:0001648") AnnotationAssertion(rdfs:label "abnormal apoptosis") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) -SubClassOf( ) +SubClassOf( ) # Class: (abnormal mandibular symphysis morphology) @@ -78362,8 +78369,8 @@ AnnotationAssertion( "MP:0008297") AnnotationAssertion(rdfs:label "retention of the adrenal gland x-zone") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) -SubClassOf( ) SubClassOf( ) +SubClassOf( ) # Class: (adrenergic chromaffin cell hyperplasia) @@ -152168,6 +152175,47 @@ EquivalentClasses( ObjectSomeValuesFr SubClassOf( ) SubClassOf( ) +# Class: (abnormal programmed cell death) + +AnnotationAssertion(Annotation( ) "any anomaly in a process which begins when a cell receives an internal or external signal and activates a series of biochemical eventsthat ends with the death of the cell") +AnnotationAssertion( "2024-02-02T21:20:46Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( "abnormal PCD") +AnnotationAssertion( "abnormal regulated cell death") +AnnotationAssertion( "MP:0014355") +AnnotationAssertion(rdfs:label "abnormal programmed cell death") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) + +# Class: (abnormal necroptotic process) + +AnnotationAssertion(Annotation( "GO:0070266") "any anomaly in the process which begins when a cell receives a signal and proceeds through a series of biochemical events, characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death") +AnnotationAssertion( "2024-02-02T21:36:56Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( "abnormal necroptosis") +AnnotationAssertion( "MP:0014356") +AnnotationAssertion(rdfs:label "abnormal necroptotic process") +SubClassOf( ) + +# Class: (abnormal pyroptosis) + +AnnotationAssertion(Annotation( "GO:0070269") "any anomaly in the caspase-1-dependent cell death subroutine that is associated with the generation of pyrogenic mediators such as IL-1beta and IL-18") +AnnotationAssertion( "2024-02-02T21:47:27Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( "MP:0014357") +AnnotationAssertion(rdfs:label "abnormal pyroptosis") +SubClassOf( ) + +# Class: (abnormal ferroptosis) + +AnnotationAssertion(Annotation( "GO:0097707") "any anomaly in the process characterized morphologically by the presence of smaller than normal mitochondria with condensed mitochondrial membrane densities, reduction or vanishing of mitochondria crista, and outer mitochondrial membrane rupture") +AnnotationAssertion( "2024-02-02T21:50:02Z"^^xsd:dateTime) +AnnotationAssertion( ) +AnnotationAssertion( "abnormal iron-dependent programmed cell death") +AnnotationAssertion( "MP:0014358") +AnnotationAssertion(rdfs:label "abnormal ferroptosis") +SubClassOf( ) + # Class: (abnormal response to antigen) AnnotationAssertion(Annotation( ) "anomaly in the immune response after exposure to an antigen")