From e8bf9df7d0c2d4c3492ce13b6faa684dc32185e1 Mon Sep 17 00:00:00 2001 From: Sue Bello Date: Thu, 8 Aug 2024 16:15:46 -0400 Subject: [PATCH] working on #3951 Added Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) --- src/ontology/mp-edit.owl | 169 ++++++++++++++++++++++++++++++++++++++- 1 file changed, 167 insertions(+), 2 deletions(-) diff --git a/src/ontology/mp-edit.owl b/src/ontology/mp-edit.owl index cd8da168..277aec95 100644 --- a/src/ontology/mp-edit.owl +++ b/src/ontology/mp-edit.owl @@ -11847,6 +11847,16 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -16559,6 +16569,7 @@ AnnotationAssertion( "increased circulating calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased circulating calcium level) @@ -16577,6 +16588,7 @@ AnnotationAssertion( "decreased circulating calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased circulating phosphate level) @@ -16594,6 +16606,7 @@ AnnotationAssertion( "decreased circulating phosphate level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal circulating serum albumin level) @@ -29393,6 +29406,7 @@ AnnotationAssertion( "increased circulating phosphate level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal circulating bilirubin level) @@ -42950,6 +42964,7 @@ AnnotationAssertion( "decreased urine calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal urine osmolality) @@ -43716,6 +43731,7 @@ AnnotationAssertion( "increased liver copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased liver copper level) @@ -43728,6 +43744,7 @@ AnnotationAssertion( "decreased liver copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (enlarged kidney) @@ -62287,6 +62304,7 @@ AnnotationAssertion( "increased platelet calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased platelet calcium level) @@ -62297,6 +62315,7 @@ AnnotationAssertion( "decreased platelet calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (increased endometrial carcinoma incidence) @@ -68351,6 +68370,7 @@ AnnotationAssertion( "increased urine calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (obsolete abnormal pyramidal neuron morphology) @@ -70492,7 +70512,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0005638") AnnotationAssertion(rdfs:label "hemochromatosis") -SubClassOf( ) +SubClassOf( ) # Class: (hemosiderosis) @@ -70501,7 +70521,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0005639") AnnotationAssertion(rdfs:label "hemosiderosis") -SubClassOf( ) +SubClassOf( ) # Class: (abnormal mean corpuscular hemoglobin concentration) @@ -84871,6 +84891,7 @@ AnnotationAssertion( "decreased liver iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal B cell anergy) @@ -85602,6 +85623,7 @@ AnnotationAssertion( "decreased spleen iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (increased spleen iron level) @@ -85615,6 +85637,7 @@ AnnotationAssertion( "increased spleen iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (increased circulating iron level) @@ -102743,6 +102766,7 @@ AnnotationAssertion( "increased kidney copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased kidney copper level) @@ -102758,6 +102782,7 @@ AnnotationAssertion( "decreased kidney copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal spleen perifollicular zone morphology) @@ -102794,6 +102819,7 @@ AnnotationAssertion( "increased intestine copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased intestine copper level) @@ -102807,6 +102833,7 @@ AnnotationAssertion( "decreased intestine copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (lactation failure) @@ -104591,6 +104618,7 @@ AnnotationAssertion( "increased kidney iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased kidney iron level) @@ -104606,6 +104634,7 @@ AnnotationAssertion( "decreased kidney iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal gut flora balance) @@ -116692,6 +116721,7 @@ AnnotationAssertion( "increased brain copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased brain copper level) @@ -116705,6 +116735,7 @@ AnnotationAssertion( "decreased brain copper level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal brainstem copper level) @@ -142395,6 +142426,7 @@ AnnotationAssertion( "increased pancreas iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased pancreas iron level) @@ -142406,6 +142438,7 @@ AnnotationAssertion( "decreased pancreas iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (osteophytes) @@ -154691,6 +154724,122 @@ AnnotationAssertion(rdfs:label "decr EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) SubClassOf( ) +# Class: (increased calcium level) + +AnnotationAssertion(Annotation( ) "increase in the concentration of calcium in the body or bodily fluids") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T18:54:05Z"^^xsd:dateTime) +AnnotationAssertion( "elevated calcium level") +AnnotationAssertion( "MP:0014537") +AnnotationAssertion(rdfs:label "increased calcium level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) + +# Class: (decreased calcium level) + +AnnotationAssertion(Annotation( ) "reduction in the concentration of calcium in the body or bodily fluids") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T18:54:18Z"^^xsd:dateTime) +AnnotationAssertion( "reduced calcium level") +AnnotationAssertion( "MP:0014538") +AnnotationAssertion(rdfs:label "decreased calcium level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) + +# Class: (increased copper level) + +AnnotationAssertion(Annotation( "CHEBI:28694") "increase in the concentration in the body of the metallic element atom that has formula Cu, and normally occurs as a cofactor for a number of proteins including amine oxidases and chaperone proteins") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:02:07Z"^^xsd:dateTime) +AnnotationAssertion( "elevated copper level") +AnnotationAssertion( "MP:0014539") +AnnotationAssertion(rdfs:label "increased copper level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) + +# Class: (decreased copper level) + +AnnotationAssertion(Annotation( "CHEBI:28694") "reduction in the concentration in the body of the metallic element atom that has formula Cu, and normally occurs as a cofactor for a number of proteins including amine oxidases and chaperone proteins") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:02:20Z"^^xsd:dateTime) +AnnotationAssertion( "reduced copper level") +AnnotationAssertion( "MP:0014540") +AnnotationAssertion(rdfs:label "decreased copper level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) + +# Class: (increased iron level) + +AnnotationAssertion(Annotation( "ISBN:0-683-40008-8") "increase in the concentrations of the metallic element that normally occurs in the heme of hemoglobin, myoglobin, transferrin, ferritin, and iron-containing porphyrins and is an essential component of enzymes such as catalase, peroxidase, and various cytochromes") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:22:13Z"^^xsd:dateTime) +AnnotationAssertion( "elevated iron level") +AnnotationAssertion( "MP:0014541") +AnnotationAssertion(rdfs:label "increased iron level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) + +# Class: (decreased iron level) + +AnnotationAssertion(Annotation( "ISBN:0-683-40008-8") "reduction in the concentrations of the metallic element that normally occurs in the heme of hemoglobin, myoglobin, transferrin, ferritin, and iron-containing porphyrins and is an essential component of enzymes such as catalase, peroxidase, and various cytochromes") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:22:28Z"^^xsd:dateTime) +AnnotationAssertion( "reduced iron level") +AnnotationAssertion( "MP:0014542") +AnnotationAssertion(rdfs:label "decreased iron level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) + +# Class: (increased manganese level) + +AnnotationAssertion(Annotation( "CHEBI:25154") "increase in the concentration of manganese in the body") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:35:55Z"^^xsd:dateTime) +AnnotationAssertion( "elevated manganese level") +AnnotationAssertion( "MP:0014543") +AnnotationAssertion(rdfs:label "increased manganese level") +SubClassOf( ) +SubClassOf( ) + +# Class: (decreased manganese level) + +AnnotationAssertion(Annotation( "CHEBI:25154") "reduction in the concentration of manganese in the body") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:36:08Z"^^xsd:dateTime) +AnnotationAssertion( "reduced manganese level") +AnnotationAssertion( "MP:0014544") +AnnotationAssertion(rdfs:label "decreased manganese level") +SubClassOf( ) +SubClassOf( ) + +# Class: (increased phosphate level) + +AnnotationAssertion(Annotation( ) "increase in the concentration of phosphate (salt or ester of phosphoric acid) in the body") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:45:01Z"^^xsd:dateTime) +AnnotationAssertion( "elevated phosphate level") +AnnotationAssertion( "MP:0014545") +AnnotationAssertion(rdfs:label "increased phosphate level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) + +# Class: (decreased phosphate level) + +AnnotationAssertion(Annotation( ) "reduction in the concentration of phosphate (salt or ester of phosphoric acid) in the body") +AnnotationAssertion( ) +AnnotationAssertion( "2024-08-08T19:45:17Z"^^xsd:dateTime) +AnnotationAssertion( "reduced phosphate level") +AnnotationAssertion( "MP:0014546") +AnnotationAssertion(rdfs:label "decreased phosphate level") +EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) +SubClassOf( ) + # Class: (abnormal response to antigen) AnnotationAssertion(Annotation( ) "anomaly in the immune response after exposure to an antigen") @@ -158935,6 +159084,7 @@ AnnotationAssertion( "increased brain iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased brain iron level) @@ -158945,6 +159095,7 @@ AnnotationAssertion( "decreased brain iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (increased heart iron level) @@ -158957,6 +159108,7 @@ AnnotationAssertion( "increased heart iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (decreased heart iron level) @@ -158969,6 +159121,7 @@ AnnotationAssertion( "decreased heart iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (increased intestinal iron level) @@ -158979,6 +159132,7 @@ AnnotationAssertion( "increased intestinal iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (abnormal glymphatic system morphology) @@ -159110,6 +159264,7 @@ AnnotationAssertion( "decreased intestinal iron level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) SubClassOf( ) +SubClassOf( ) # Class: (adipose tissue inflammation) @@ -167346,6 +167501,7 @@ AnnotationAssertion( "MP:0021126") AnnotationAssertion(rdfs:label "increased phosphocholine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased phosphocholine level) @@ -167357,6 +167513,7 @@ AnnotationAssertion( "MP:0021127") AnnotationAssertion(rdfs:label "decreased phosphocholine level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (increased choline level) @@ -167508,6 +167665,7 @@ AnnotationAssertion( "MP:0021140") AnnotationAssertion(rdfs:label "increased cardiac muscle calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (decreased cardiac muscle calcium level) @@ -167526,6 +167684,7 @@ AnnotationAssertion( "MP:0021141") AnnotationAssertion(rdfs:label "decreased cardiac muscle calcium level") EquivalentClasses( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectSomeValuesFrom( )))) +SubClassOf( ) SubClassOf( ) # Class: (abnormal brain N-acetyl-L-aspartic acid level) @@ -176615,6 +176774,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030595") AnnotationAssertion(rdfs:label "increased brain manganese level") +SubClassOf( ) SubClassOf( ) # Class: (decreased brain manganese level) @@ -176626,6 +176786,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030596") AnnotationAssertion(rdfs:label "decreased brain manganese level") +SubClassOf( ) SubClassOf( ) # Class: (abnormal liver manganese level) @@ -176651,6 +176812,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030598") AnnotationAssertion(rdfs:label "increased liver manganese level") +SubClassOf( ) SubClassOf( ) # Class: (decreased liver manganese level) @@ -176666,6 +176828,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030599") AnnotationAssertion(rdfs:label "decreased liver manganese level") +SubClassOf( ) SubClassOf( ) # Class: (abnormal circulating manganese level) @@ -176687,6 +176850,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030601") AnnotationAssertion(rdfs:label "increased circulating manganese level") +SubClassOf( ) SubClassOf( ) # Class: (decreased circulating manganese level) @@ -176698,6 +176862,7 @@ AnnotationAssertion( "MPheno.ontology") AnnotationAssertion( "MP:0030602") AnnotationAssertion(rdfs:label "decreased circulating manganese level") +SubClassOf( ) SubClassOf( ) # Class: (increased sperm number)