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r_package.yml
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name: R-package
on:
push:
branches:
- master
pull_request:
branches:
- master
- release/*
# automatically cancel in-progress builds if another commit is pushed
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
env:
# hack to get around this:
# https://stat.ethz.ch/pipermail/r-package-devel/2020q3/005930.html
_R_CHECK_SYSTEM_CLOCK_: 0
# ignore R CMD CHECK NOTE checking how long it has
# been since the last submission
_R_CHECK_CRAN_INCOMING_REMOTE_: 0
# CRAN ignores the "installed size is too large" NOTE,
# so our CI can too. Setting to a large value here just
# to catch extreme problems
_R_CHECK_PKG_SIZES_THRESHOLD_: 100
jobs:
test:
name: ${{ matrix.task }} (${{ matrix.os }}, ${{ matrix.compiler }}, R ${{ matrix.r_version }}, ${{ matrix.build_type }})
runs-on: ${{ matrix.os }}
container: ${{ matrix.container }}
timeout-minutes: 60
strategy:
fail-fast: false
matrix:
include:
################
# CMake builds #
################
- os: ubuntu-latest
task: r-package
compiler: gcc
r_version: 3.6
build_type: cmake
container: 'ubuntu:18.04'
- os: ubuntu-latest
task: r-package
compiler: gcc
r_version: 4.3
build_type: cmake
container: 'ubuntu:22.04'
- os: ubuntu-latest
task: r-package
compiler: clang
r_version: 3.6
build_type: cmake
container: 'ubuntu:18.04'
- os: ubuntu-latest
task: r-package
compiler: clang
r_version: 4.3
build_type: cmake
container: 'ubuntu:22.04'
- os: macOS-latest
task: r-package
compiler: gcc
r_version: 4.3
build_type: cmake
container: null
- os: macOS-latest
task: r-package
compiler: clang
r_version: 4.3
build_type: cmake
container: null
- os: windows-latest
task: r-package
compiler: MINGW
toolchain: MINGW
r_version: 3.6
build_type: cmake
container: null
- os: windows-latest
task: r-package
compiler: MINGW
toolchain: MSYS
r_version: 4.3
build_type: cmake
container: null
# Visual Studio 2019
- os: windows-2019
task: r-package
compiler: MSVC
toolchain: MSVC
r_version: 3.6
build_type: cmake
container: null
# Visual Studio 2022
- os: windows-2022
task: r-package
compiler: MSVC
toolchain: MSVC
r_version: 4.3
build_type: cmake
container: null
###############
# CRAN builds #
###############
- os: windows-latest
task: r-package
compiler: MINGW
toolchain: MINGW
r_version: 3.6
build_type: cran
container: null
- os: windows-latest
task: r-package
compiler: MINGW
toolchain: MSYS
r_version: 4.3
build_type: cran
container: null
- os: ubuntu-latest
task: r-package
compiler: gcc
r_version: 4.3
build_type: cran
container: 'ubuntu:22.04'
- os: macOS-latest
task: r-package
compiler: clang
r_version: 4.3
build_type: cran
container: null
################
# Other checks #
################
- os: ubuntu-latest
task: r-rchk
compiler: gcc
r_version: 4.3
build_type: cran
container: 'ubuntu:22.04'
steps:
- name: Prevent conversion of line endings on Windows
if: startsWith(matrix.os, 'windows')
shell: pwsh
run: git config --global core.autocrlf false
- name: Install packages used by third-party actions
if: startsWith(matrix.os, 'ubuntu')
shell: bash
run: |
apt-get update -y
apt-get install --no-install-recommends -y \
ca-certificates \
dirmngr \
gpg \
gpg-agent \
software-properties-common \
sudo
# install newest version of git
# ref:
# - https://unix.stackexchange.com/a/170831/550004
# - https://git-scm.com/download/linux
add-apt-repository ppa:git-core/ppa -y
apt-get update -y
apt-get install --no-install-recommends -y \
git
- name: Trust git cloning LightGBM
if: startsWith(matrix.os, 'ubuntu')
run: |
git config --global --add safe.directory "${GITHUB_WORKSPACE}"
- name: Checkout repository
uses: actions/checkout@v3
with:
fetch-depth: 5
submodules: true
- name: Install pandoc
uses: r-lib/actions/setup-pandoc@v2
- name: install tinytex
if: startsWith(matrix.os, 'windows')
uses: r-lib/actions/setup-tinytex@v2
env:
CTAN_MIRROR: https://ctan.math.illinois.edu/systems/win32/miktex
TINYTEX_INSTALLER: TinyTeX
- name: Setup and run tests on Linux and macOS
if: matrix.os == 'macOS-latest' || matrix.os == 'ubuntu-latest'
shell: bash
run: |
export TASK="${{ matrix.task }}"
export COMPILER="${{ matrix.compiler }}"
export GITHUB_ACTIONS="true"
if [[ "${{ matrix.os }}" == "macOS-latest" ]]; then
export OS_NAME="macos"
elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then
export OS_NAME="linux"
export IN_UBUNTU_BASE_CONTAINER="true"
# the default version of cmake provided on Ubuntu 18.04 (v3.10.2), is not supported by LightGBM
# see https://github.com/microsoft/LightGBM/issues/5642
if [[ "${{ matrix.container }}" == "ubuntu:18.04" ]]; then
export INSTALL_CMAKE_FROM_RELEASES="true"
fi
fi
export BUILD_DIRECTORY="$GITHUB_WORKSPACE"
export R_VERSION="${{ matrix.r_version }}"
export R_BUILD_TYPE="${{ matrix.build_type }}"
$GITHUB_WORKSPACE/.ci/setup.sh
$GITHUB_WORKSPACE/.ci/test.sh
- name: Setup and run tests on Windows
if: startsWith(matrix.os, 'windows')
shell: pwsh -command ". {0}"
run: |
$env:BUILD_SOURCESDIRECTORY = $env:GITHUB_WORKSPACE
$env:LGB_VER = (Get-Content -TotalCount 1 $env:BUILD_SOURCESDIRECTORY\VERSION.txt).trim().replace('rc', '-')
$env:TOOLCHAIN = "${{ matrix.toolchain }}"
$env:R_VERSION = "${{ matrix.r_version }}"
$env:R_BUILD_TYPE = "${{ matrix.build_type }}"
$env:COMPILER = "${{ matrix.compiler }}"
$env:GITHUB_ACTIONS = "true"
$env:TASK = "${{ matrix.task }}"
& "$env:GITHUB_WORKSPACE/.ci/test_windows.ps1"
test-r-sanitizers:
name: r-sanitizers (ubuntu-latest, R-devel, ${{ matrix.compiler }} ASAN/UBSAN)
timeout-minutes: 60
runs-on: ubuntu-latest
container: wch1/r-debug
strategy:
fail-fast: false
matrix:
include:
- r_customization: san
compiler: gcc
- r_customization: csan
compiler: clang
steps:
- name: Trust git cloning LightGBM
run: |
git config --global --add safe.directory "${GITHUB_WORKSPACE}"
- name: Checkout repository
uses: actions/checkout@v3
with:
fetch-depth: 5
submodules: true
- name: Install packages
shell: bash
run: |
RDscript${{ matrix.r_customization }} -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())"
sh build-cran-package.sh --r-executable=RD${{ matrix.r_customization }}
RD${{ matrix.r_customization }} CMD INSTALL lightgbm_*.tar.gz || exit -1
- name: Run tests with sanitizers
shell: bash
run: |
cd R-package/tests
exit_code=0
RDscript${{ matrix.r_customization }} testthat.R >> tests.log 2>&1 || exit_code=-1
cat ./tests.log
exit ${exit_code}
test-r-debian-clang:
name: r-package (debian, R-devel, clang-${{ matrix.clang-version }})
timeout-minutes: 60
strategy:
fail-fast: false
matrix:
# list of versions tested in CRAN "Additional Checks":
# https://cran.r-project.org/web/checks/check_issue_kinds.html
clang-version:
- 16
- 17
- 18
runs-on: ubuntu-latest
container: rhub/debian-clang-devel
env:
DEBIAN_FRONTEND: noninteractive
steps:
- name: Install Git before checkout
shell: bash
run: |
apt-get update --allow-releaseinfo-change
apt-get install --no-install-recommends -y git
- name: Trust git cloning LightGBM
run: |
git config --global --add safe.directory "${GITHUB_WORKSPACE}"
- name: Checkout repository
uses: actions/checkout@v3
with:
fetch-depth: 5
submodules: true
- name: install clang
run: |
./.ci/install-clang-devel.sh ${{ matrix.clang-version }}
- name: Install packages and run tests
shell: bash
run: |
export PATH=/opt/R-devel/bin/:${PATH}
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'markdown', 'Matrix', 'RhpcBLASctl', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())"
sh build-cran-package.sh
R CMD check --as-cran --run-donttest lightgbm_*.tar.gz || exit -1
echo ""
echo "install logs:"
echo ""
cat lightgbm.Rcheck/00install.out
echo ""
if grep -q -E "NOTE|WARNING|ERROR" lightgbm.Rcheck/00check.log; then
echo "NOTEs, WARNINGs, or ERRORs have been found by R CMD check"
exit -1
fi
all-r-package-jobs-successful:
if: always()
runs-on: ubuntu-latest
needs: [test, test-r-sanitizers, test-r-debian-clang]
steps:
- name: Note that all tests succeeded
uses: re-actors/[email protected]
with:
jobs: ${{ toJSON(needs) }}