diff --git a/.coveragerc b/.coveragerc
deleted file mode 100644
index 013dd202..00000000
--- a/.coveragerc
+++ /dev/null
@@ -1,2 +0,0 @@
-[report]
-show_missing = True
diff --git a/setup.cfg b/setup.cfg
index 7afb716a..f6a94ecf 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,6 +1,13 @@
 [tool:pytest]
 addopts = --cov-report term-missing --cov mir_eval --cov-report=xml --mpl --mpl-baseline-path=baseline_images/test_display
 
+[coverage:report]
+show_missing = True
+
+[coverage:run]
+omit =
+    separation.py
+
 [pydocstyle]
 # convention = numpy
 # Below is equivalent to numpy convention + D400 and D205