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changelog.md

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2020-03-27 0.6.1

  • upgrade jena from 3.3.0 to 3.14.0, which in turn brings in upgraded com.fasterxml.jackson.core:jackson-databind to address vulnerability reported by snyk.

    Good testing with $ sbt "run download convert"

  • fix assembly.

      $ java -jar target/scala-2.12/cf2rdf-0.6.1.jar download convert
  Downloading https://raw.githubusercontent.com/cf-convention/cf-convention.github.io/master/Data/cf-standard-names/current/src/cf-standard-name-table.xml
              -> ./cf2rdf_output/cf-standard-name-table.xml

  Downloading http://vocab.nerc.ac.uk/collection/P07/current/
              -> ./cf2rdf_output/nvs_P07.rdf

  [main] WARN org.apache.jena.riot - [line: 1, col: 121] {W119} A processing instruction is in RDF content. No processing was done.

  Summary: (saved in ./cf2rdf_output/cf-standard-name-table.conv-stats.txt)
      cf2rdf conversion
      input:  https://raw.githubusercontent.com/cf-convention/cf-convention.github.io/master/Data/cf-standard-names/current/src/cf-standard-name-table.xml
      output: ./cf2rdf_output/cf-standard-name-table.rdf

      vocabulary properties from input file:
       version_number: 72; last_modified: 2020-03-10T11:52:02Z

      conversion stats:
      numConcepts = 4419
      numEntries = 4418
      numWithNoCanonicalUnits = 12
      numWithNoDefinitions = 19

      Mapping ontology:
        mappingTermsAdded     = 4418
        mappingOutputFilename = ./cf2rdf_output/cfonmap.n3

2017-09-08 0.6.0

  • watchdog adjustments

2017-09-07 0.5.0

  • add watchdog option, suitable to be used in a cronjob. This checks for current remote CF version and triggers conversion/registration in case of new version, based on comparison with latest processed file.

2017-09-07 0.4.0

  • cf2rdf can now register the generated ontologies
  • much simpler mechanism to specify the parameters to the program by explicitly using a configuration file visible to the user.

2017-09-06 0.3.0

  • overall revision, improved implementation, and simpler full execution
    • upgrade various dependencies; tool version captured in build.sbt
    • more parameters captured in application configuration
    • cf2rdf now takes care of downloading the XML and the NVS RDF files
    • now assembling/releasing executable JAR
    • with all default parameters, except for the CF version number, which can be indicated via the CF_VERSION en var, the whole conversion and generation of mapping with NVS ontology can be run with this single command: $ CF_VERSION=46 java -jar cf2rdf-x.y.z.jar

2017-06-06

  • capture the traditional metadata properties right in the translation so the resulting ontology can be registered without additional editing at the ORR. Exercising this with latest CF v44.

  • capture the traditional metadata properties also for the mapping ontology

  • TODO use ORR client library when available - for now just copying Omv and OvmMmi vocabularies

  • resolve #3 "upgrade jena library"

    • now using jena 3.3.0

    • various code adjustments as Jena is now more strict. In concrete, for the mapping with NVS, there are invalid IRIs in http://vocab.nerc.ac.uk/collection/P07/current/, which Jena now complains about. Implemented a workaround simply consisting of replacing the offending spaces with %20. The offending IRIs are in the following lines:

          <owl:sameAs rdf:resource="http://mmisw.org/ont/cf/parameter/mole_fraction_of_chlorine dioxide_in_air"/>
    <owl:sameAs rdf:resource="http://mmisw.org/ont/cf/parameter/mole_fraction_of_chlorine monoxide_in_air"/>
    <owl:sameAs rdf:resource="http://mmisw.org/ont/cf/parameter/mole_fraction_of_dichlorine peroxide_in_air"/>
    <owl:sameAs rdf:resource="http://mmisw.org/ont/cf/parameter/mole_fraction_of_hypochlorous acid_in_air"/>
    <owl:sameAs rdf:resource="http://mmisw.org/ont/cf/parameter/rate_of_ hydroxyl_radical_destruction_due_to_reaction_with_nmvoc"/>

    • SKOS vocabulary provided by Jena