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For some HCP subjects (~1/2 of the 20 I'm testing), hcp.preprocessing.apply_ref_correction seems to be introducing significant changes in the across-sensor average PSD. This came up when trying to classifying resting state from motor trials. Resting state runs seemed to have wide-band increases in power after ref correction. Plots examples below are an average example of this effect -- some are worse, some are better.
bad channels and reference channels were removed prior to PSD calculation for all plots below
Annotations added to raw files using hcp.read_annots. (PSD now respects these annotations 4345)
PSD on raw unprocessed data:
PSD on raw data + BP filtering (0.1-55Hz, fir filter, 2s window):
PSD on raw data + SSP projectors (exact same projectors used for every run):
PSD on raw data + hcp.preprocessing.apply_ref_correction:
The text was updated successfully, but these errors were encountered:
wronk
changed the title
Reference correction introducing shifts in PSDs
Reference correction introduces shifts in PSDs
Jun 28, 2017
For some HCP subjects (~1/2 of the 20 I'm testing),
hcp.preprocessing.apply_ref_correction
seems to be introducing significant changes in the across-sensor average PSD. This came up when trying to classifying resting state from motor trials. Resting state runs seemed to have wide-band increases in power after ref correction. Plots examples below are an average example of this effect -- some are worse, some are better.hcp.read_annots
. (PSD now respects these annotations 4345)PSD on raw unprocessed data:
PSD on raw data + BP filtering (0.1-55Hz, fir filter, 2s window):
PSD on raw data + SSP projectors (exact same projectors used for every run):
PSD on raw data +
hcp.preprocessing.apply_ref_correction
:The text was updated successfully, but these errors were encountered: