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index.html
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<html>
<head>
<meta charset="UTF-8">
<title>Monarch Phenotype Grid Widget</title>
<!--
The config file seems to be unused for this example.
So I'm commenting it out unless things get weird.
<script src="config/phenogrid_config.js"></script>
-->
<script src="dist/phenogrid-bundle.js"></script>
<link rel="stylesheet" type="text/css" href="dist/phenogrid-bundle.css">
<script>
var params = new URLSearchParams(document.location.search.substring(1));
var legacy = params.get('legacy');
// Use the same server URL
// var serverURL = "https://monarchinitiative.org";
var serverURL = "https://api.monarchinitiative.org/api/";
if (legacy === '1') {
serverURL = "https://monarchinitiative.org";
}
// Shared yAxis data
var yAxis = [
// {
// "id": "HP:0000006",
// "term": "Autosomal dominant inheritance"
// },
{
"id": "HP:0000174",
"term": "Abnormality of the palate"
},
{
"id": "HP:0000194",
"term": "Open mouth"
},
{
"id": "HP:0000218",
"term": "High palate"
},
{
"id": "HP:0000238",
"term": "Hydrocephalus"
},
{
"id": "HP:0000244",
"term": "Brachyturricephaly"
},
{
"id": "HP:0000272",
"term": "Malar flattening"
},
{
"id": "HP:0000303",
"term": "Mandibular prognathia"
},
{
"id": "HP:0000316",
"term": "Hypertelorism"
},
{
"id": "HP:0000322",
"term": "Short philtrum"
},
{
"id": "HP:0000324",
"term": "Facial asymmetry"
},
{
"id": "HP:0000327",
"term": "Hypoplasia of the maxilla"
},
{
"id": "HP:0000348",
"term": "High forehead"
},
{
"id": "HP:0000431",
"term": "Wide nasal bridge"
},
{
"id": "HP:0000452",
"term": "Choanal stenosis"
},
{
"id": "HP:0000453",
"term": "Choanal atresia"
},
{
"id": "HP:0000470",
"term": "Short neck"
},
{
"id": "HP:0000486",
"term": "Strabismus"
},
{
"id": "HP:0000494",
"term": "Downslanted palpebral fissures"
},
{
"id": "HP:0000508",
"term": "Ptosis"
},
{
"id": "HP:0000586",
"term": "Shallow orbits"
},
{
"id": "HP:0000678",
"term": "Dental crowding"
},
{
"id": "HP:0001156",
"term": "Brachydactyly syndrome"
},
{
"id": "HP:0001249",
"term": "Intellectual disability"
},
{
"id": "HP:0002308",
"term": "Arnold-Chiari malformation"
},
{
"id": "HP:0002676",
"term": "Cloverleaf skull"
},
{
"id": "HP:0002780",
"term": "Bronchomalacia"
},
{
"id": "HP:0003041",
"term": "Humeroradial synostosis"
},
{
"id": "HP:0003070",
"term": "Elbow ankylosis"
},
{
"id": "HP:0003196",
"term": "Short nose"
},
{
"id": "HP:0003272",
"term": "Abnormality of the hip bone"
},
{
"id": "HP:0003307",
"term": "Hyperlordosis"
},
{
"id": "HP:0003795",
"term": "Short middle phalanx of toe"
},
{
"id": "HP:0004209",
"term": "Clinodactyly of the 5th finger"
},
{
"id": "HP:0004322",
"term": "Short stature"
},
{
"id": "HP:0004440",
"term": "Coronal craniosynostosis"
},
{
"id": "HP:0005048",
"term": "Synostosis of carpal bones"
},
{
"id": "HP:0005280",
"term": "Depressed nasal bridge"
},
{
"id": "HP:0005347",
"term": "Cartilaginous trachea"
},
{
"id": "HP:0006101",
"term": "Finger syndactyly"
},
{
"id": "HP:0006110",
"term": "Shortening of all middle phalanges of the fingers"
},
{
"id": "HP:0009602",
"term": "Abnormality of thumb phalanx"
},
{
"id": "HP:0009773",
"term": "Symphalangism affecting the phalanges of the hand"
},
{
"id": "HP:0010055",
"term": "Broad hallux"
},
{
"id": "HP:0010669",
"term": "Hypoplasia of the zygomatic bone"
},
{
"id": "HP:0011304",
"term": "Broad thumb"
}
];
window.onload = function() {
/*
// Example DEBUG, we show that the BioLink /sim endpoint fails when
// a bunch of phenotypes are applied to the drosophila taxon.
var dataDebug = {
"title": "Human, Mouse and Fish models compared to Pfeiffer Syndrome (OMIM:101600)",
"xAxis": [
{
"groupId": "9606",
"groupName": "Homo sapiens"
},
// {
// "groupId": "10090",
// "groupName": "Mus musculus"
// },
// {
// "groupId": "7955",
// "groupName": "Danio rerio"
// }
],
"yAxis": yAxis
};
Phenogrid.createPhenogridForElement(document.getElementById('phenogrid_container1'), {
serverURL: serverURL,
gridSkeletonData: dataDebug
});
return;
*/
// Example 1, there are three groups that are loaded and each of them has simsearch matches.
var data1 = {
"title": "Human, Mouse and Fish models compared to Pfeiffer Syndrome (OMIM:101600)",
"xAxis": [
{
"groupId": "9606",
"groupName": "Homo sapiens"
},
{
"groupId": "10090",
"groupName": "Mus musculus"
},
{
"groupId": "7955",
"groupName": "Danio rerio"
}
],
"yAxis": yAxis
};
Phenogrid.createPhenogridForElement(document.getElementById('phenogrid_container1'), {
serverURL: serverURL,
gridSkeletonData: data1
});
// Example 2, Same as Example 1
Phenogrid.createPhenogridForElement(document.getElementById('phenogrid_container2'), {
serverURL: serverURL,
gridSkeletonData: data1
});
// Example 3, there are two species that are loaded and each of them has simsearch matches, but we only show one by default.
var data3 = {
"title": "Human, Mouse, Fish models compared to Pfeiffer Syndrome (OMIM:101600)",
"xAxis": [
{
"groupId": "9606",
"groupName": "Homo sapiens"
},
{
"groupId": "10090",
"groupName": "Mus musculus"
},
{
"groupId": "7955",
"groupName": "Danio rerio"
}
],
"yAxis": yAxis
};
Phenogrid.createPhenogridForElement(document.getElementById('phenogrid_container3'), {
serverURL: serverURL,
gridSkeletonData: data3
});
// Example 4, we wanted to show matches for all the three species but none of them has simsearch matches. Friendly messages show instead.
var data4 = {
"title": "Human, Mouse and Fish models compared to Pfeiffer Syndrome (OMIM:101600)",
"xAxis": [
{
"groupId": "9606",
"groupName": "Homo sapiens"
},
{
"groupId": "10090",
"groupName": "Mus musculus"
},
{
"groupId": "7955",
"groupName": "Danio rerio"
}
],
"yAxis": [
{id:"WBPhenotype:0001331"},
{id:"WBPhenotype:0000679"},
{id:"WBPhenotype:0002001"},
{id:"WBPhenotype:0000050"}
]
};
Phenogrid.createPhenogridForElement(document.getElementById('phenogrid_container4'), {
serverURL: serverURL,
gridSkeletonData: data4
});
// Example 5, we have four species that we want to show their matches. But we only show two by default and one doesn't have any matches.
var data5 = {
"title": "Human, Mouse, Fish and Fly models compared to Pfeiffer Syndrome (OMIM:101600)",
"xAxis": [
{
"groupId": "9606",
"groupName": "Homo sapiens"
},
{
"groupId": "10090",
"groupName": "Mus musculus"
},
{
"groupId": "7955",
"groupName": "Danio rerio"
},
{
"groupId": "7227",
"groupName": "Drosophila melanogaster"
}
],
"yAxis": yAxis
};
Phenogrid.createPhenogridForElement(document.getElementById('phenogrid_container5'), {
serverURL: serverURL,
gridSkeletonData: data5
});
}
</script>
<style>
body {
padding: 10px;
}
.pg_container {
margin: 0;
padding: 0;
}
</style>
</head>
<body>
<h2>Example 1</h2>
<div id="phenogrid_container1" class="clearfix"></div>
<h2>Example 2</h2>
<div id="phenogrid_container2" class="clearfix"></div>
<h2>Example 3</h2>
<div id="phenogrid_container3" class="clearfix"></div>
<h2>Example 4</h2>
<div id="phenogrid_container4" class="clearfix"></div>
<h2>Example 5</h2>
<div id="phenogrid_container5" class="clearfix"></div>
</body>
</html>